Construct: ORF ccsbBroad304_12738
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007295.1_s304c1, BRDN0000405803
- Derived from:
- ccsbBroadEn_12738
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ABHD11 (83451)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12738
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83451 | ABHD11 | abhydrolase domain containi... | NM_001321382.1 | 65.3% | 65.3% | 1_210del |
| 2 | human | 83451 | ABHD11 | abhydrolase domain containi... | XM_006716144.2 | 65.3% | 65.3% | 1_210del |
| 3 | human | 83451 | ABHD11 | abhydrolase domain containi... | XM_011516591.1 | 65.3% | 65.3% | 1_210del |
| 4 | human | 83451 | ABHD11 | abhydrolase domain containi... | NM_001145364.2 | 47.3% | 42.6% | (many diffs) |
| 5 | human | 83451 | ABHD11 | abhydrolase domain containi... | NM_148913.3 | 42.8% | 42.8% | 1_528del |
| 6 | human | 83451 | ABHD11 | abhydrolase domain containi... | NM_148912.3 | 41.9% | 41.9% | 1_549del |
| 7 | human | 83451 | ABHD11 | abhydrolase domain containi... | XM_024446948.1 | 37.9% | 37.9% | 1_648del |
| 8 | human | 83451 | ABHD11 | abhydrolase domain containi... | XM_024446947.1 | 32.5% | 29.2% | (many diffs) |
| 9 | human | 83451 | ABHD11 | abhydrolase domain containi... | XM_024446949.1 | 30.4% | 30.4% | 1_906del |
| 10 | human | 83451 | ABHD11 | abhydrolase domain containi... | NR_135627.1 | 26.1% | (many diffs) | |
| 11 | human | 83451 | ABHD11 | abhydrolase domain containi... | NR_026912.2 | 23.8% | 1_784del;1181_1660del | |
| 12 | human | 83451 | ABHD11 | abhydrolase domain containi... | XR_002956491.1 | 21.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 462
- ORF length:
- 396
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgag ggccatcaac atcgcagatg agctgccccg ctcccgtgcc cgaaaactgg 121 cggatgaaca gctcagttct gtcatccagg acatggccgt gcggcagcac ctgctcacta 181 acctggtaga ggtagacggg cgcttcgtgt ggagggtgaa cttggatgcc ctgacccagc 241 acctagacaa gatcttggct ttcccacaga ggcaggagtc ctacctcggg ccaacactct 301 ttctccttgg tggaaactcc cagttcgtgc atcccagcca ccaccctgag attatgcggc 361 tcttccctcg ggcccagatg cagacggtgc cgaacgctgg ccactggatc cacgctgacc 421 gcccacagga cttcatagct gccatccgag gcttcctggt ctacccaact ttcttgtaca 481 aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag 541 ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta