Construct: ORF ccsbBroad304_13489

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006780.1_s304c1, BRDN0000410695
Derived from:
ccsbBroadEn_13489
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NPHP4 (261734)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13489
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 261734 NPHP4 nephrocystin 4 XM_017001002.1 94.3% 92.9% (many diffs)
2 human 261734 NPHP4 nephrocystin 4 XR_946605.1 88% (many diffs)
3 human 261734 NPHP4 nephrocystin 4 XM_017000998.1 73% 71.8% (many diffs)
4 human 261734 NPHP4 nephrocystin 4 XM_017000996.1 62.9% 61.9% (many diffs)
5 human 261734 NPHP4 nephrocystin 4 XM_011541214.1 62.9% 61.8% (many diffs)
6 human 261734 NPHP4 nephrocystin 4 XM_011541213.1 62.3% 61.3% (many diffs)
7 human 261734 NPHP4 nephrocystin 4 NM_015102.5 62.3% 61.2% (many diffs)
8 human 261734 NPHP4 nephrocystin 4 XM_006710563.3 62.3% 61.2% (many diffs)
9 human 261734 NPHP4 nephrocystin 4 XM_011541216.2 62.3% 61.2% (many diffs)
10 human 261734 NPHP4 nephrocystin 4 XM_011541217.2 62.3% 61.2% (many diffs)
11 human 261734 NPHP4 nephrocystin 4 XM_011541218.2 62.3% 61.2% (many diffs)
12 human 261734 NPHP4 nephrocystin 4 XM_017000997.1 62.3% 61.2% (many diffs)
13 human 261734 NPHP4 nephrocystin 4 XM_011541215.1 59.8% 58.8% (many diffs)
14 human 261734 NPHP4 nephrocystin 4 XR_001737115.1 58.1% (many diffs)
15 human 261734 NPHP4 nephrocystin 4 XR_001737114.1 57.9% (many diffs)
16 human 261734 NPHP4 nephrocystin 4 XM_017000999.1 50% 48.9% (many diffs)
17 human 261734 NPHP4 nephrocystin 4 XM_017001000.2 50% 48.9% (many diffs)
18 human 261734 NPHP4 nephrocystin 4 NR_111987.2 49.6% 1_220del;2954_5502del
19 human 261734 NPHP4 nephrocystin 4 XM_017001001.1 43.7% 42.4% (many diffs)
20 human 261734 NPHP4 nephrocystin 4 NM_001291594.2 26.7% 24.2% (many diffs)
21 human 261734 NPHP4 nephrocystin 4 NM_001291593.2 26.7% 24.1% (many diffs)
22 human 261734 NPHP4 nephrocystin 4 XM_017001003.1 26.7% 24.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2799
ORF length:
2733
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa cgactggcac aggatcttca cccaaaacgt gcttgtccct ccccacccac
121agagagcgcg ccagccttgg aaggaatcca cggcattcca gtgtgtcctc aagtggctgg
181acggaccggt aattaggcag ggcgtgctgg aggtactgtc agaggttgaa tgccatctgc
241gagtgtcttt ctttgatgtc acctaccggc acttctttgg gaggacgtgg aaaaccacag
301tgaagccgac gaagagaccg ccgtccagga tcgtctttaa tgagcccttg tattttcaca
361catccctaaa ccaccctcat atcgtggctg tggtggaagt ggtcgctgag ggcaagaaac
421gggatgggag cctccagaca ttgtcctgtg ggtttggaat tcttcggatc ttcagcaacc
481agccggactc tcctatctct gcttcccagg acaaaaggtt gcggctgtac catggcaccc
541ccagagccct cctgcacccg cttctccagg accccgcaga gcaaaacaga cacatgaccc
601tcattgagaa ctgcagcctg cagtacacgc tgaagccaca cccggccctg gagcctgcgt
661tccaccttct tcctgagaac cttctggtgt ctggtctgca gcagatacct ggcctgcttc
721cagctcatgg agaatccggc gacgctctcc gaaagcctcg cctccagaag cccatcacgg
781ggcacttgga tgacttattc ttcaccctgt acccctccct ggagaagttt gaggaagagc
841tgctggagct ccacgtccag gaccacttcc aggagggatg tggcccactg gacggtggtg
901ccctggagat cctggagcgg cgcctgcgtg tgggcgtgca caatggtctg ggcttcgtgc
961agaggccgca ggtcgttgta ctggtgcctg agatggatgt ggccttgacg cgctcagcta
1021gcttcagcag gaaagtggtc tcctcttcca agaccagctc cgggagccaa gctctggttt
1081tgagaagccg cctccgcctc ccagagatgg tcggccaccc tgcatttgcg gtcatcttcc
1141agctggagta cgtgttcagc agccctgcag gagtggacgg caatgcagct tcggtcacct
1201ctctgtccaa cctggcatgc atgcacatgg tccgctgggc tgtttggaac cccttgctgg
1261aagctgattc tggaagggtg accctgcctc tgcagggtgg gatccagccc aacccctcgc
1321actgtctggt ctacaaggta ccctcagcca gcatgagctc tgaagaggtg aagcaggtgg
1381agtcgggtac actccggttc cagttctcgc tgggctcaga agaacacctg gatgcaccca
1441cggagcctgt cagtggcccc aaagtggagc ggcggccttc caggaaacca cccacgtccc
1501cttcgagccc gccagcgcca gtacctcgag ttctcgctgc cccgcagaac tcacctgtgg
1561gaccagggtt gtcaatttcc cagctggcgg cctccccgcg gtccccgact cagcactgct
1621tggccaggcc tacttcacag ctaccccatg gctctcaggc ctccccggcc caggcagagt
1681tcccgttgga ggccggtatc tcccacctgg aagccgacct gagccagacc tccctggtcc
1741tggaaacatc cattgccgaa cagttacagg agctgccgtt cacgcctttg catgccccta
1801ttgttgtggg aacccagacc aggagctctg cagggcagcc ctcgagagcc tccatggtgc
1861tcctgcagtc ctccggcttt cccgagattc tggatgccaa taaacagcca gccgaggctg
1921tcagcgctac agaacctgtg acgtttaacc ctcagaagga agaatcagat tgtctacaaa
1981gcaacgagat ggtgctacag tttcttgcct ttagcagagt ggcccaggac tgccgaggaa
2041catcatggcc aaagactgtg tatttcacct tccagttcta ccgcttccca cccgcaacga
2101cgccacgact gcagctggtc cagctggatg aggccggcca gcccagctct ggcgccctga
2161cccacatcct cgtgcctgtg agcagagatg gcacctttga tgctgggtct cctggcttcc
2221agctgaggta catggtgggc cctgggttcc tgaagccagg tgagcggcgc tgctttgccc
2281gctacctggc cgtgcagacc ctgcagattg acgtctggga cggagactcc ctgctgctca
2341tcggatctgc tgccgtccag atgaagcatc tcctccgcca aggccggccg gctgtgcagg
2401cctcccacga gcttgaggtc gtggcaactg aatacgagca ggacaacatg gtggtgagtg
2461gagacatgct ggggtttggc cgcgtcaagc ccatcggcgt ccactcggtg gtgaagggcc
2521ggctgcacct gactttggcc aacgtgggtc acccgtgtga acagaaagtg agaggttgta
2581gcacattgcc accgtccaga tctcgggtca tctcaaacga tggagccagc cgcttctctg
2641gaggcagcct cctcacgact ggaagctcaa ggcgctgggc tctgcaggcg actgtgctgt
2701ttggagaagt gggaaccctg ccagtggcat ttgtgtctgg ttggctgctc atctgcaagg
2761gaaggagaaa tggagagaag gtcaggagga acatagactg cccaactttc ttgtacaaag
2821tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
2881gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)