Construct: ORF ccsbBroad304_14159
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007155.1_s304c1, BRDN0000407158
- Derived from:
- ccsbBroadEn_14159
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- SLCO1C1 (53919)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14159
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 53919 | SLCO1C1 | solute carrier organic anio... | NM_017435.4 | 99.7% | 1.6% | (many diffs) |
| 2 | human | 53919 | SLCO1C1 | solute carrier organic anio... | XM_005253394.3 | 99.7% | 1.6% | (many diffs) |
| 3 | human | 53919 | SLCO1C1 | solute carrier organic anio... | XM_011520704.3 | 99.6% | 1.6% | (many diffs) |
| 4 | human | 53919 | SLCO1C1 | solute carrier organic anio... | NM_001145946.1 | 93% | 1.2% | (many diffs) |
| 5 | human | 53919 | SLCO1C1 | solute carrier organic anio... | XM_011520703.3 | 92.9% | 1.2% | (many diffs) |
| 6 | human | 53919 | SLCO1C1 | solute carrier organic anio... | NM_001145945.1 | 92.8% | 1.7% | (many diffs) |
| 7 | human | 53919 | SLCO1C1 | solute carrier organic anio... | XM_017019486.2 | 83.3% | 1.6% | (many diffs) |
| 8 | human | 53919 | SLCO1C1 | solute carrier organic anio... | XM_017019487.2 | 83.3% | 1.6% | (many diffs) |
| 9 | human | 53919 | SLCO1C1 | solute carrier organic anio... | NM_001145944.1 | 77.3% | 1.4% | (many diffs) |
| 10 | human | 53919 | SLCO1C1 | solute carrier organic anio... | XM_005253396.3 | 77.3% | 1.4% | (many diffs) |
| 11 | human | 53919 | SLCO1C1 | solute carrier organic anio... | XM_024449024.1 | 77.3% | 1.4% | (many diffs) |
| 12 | human | 53919 | SLCO1C1 | solute carrier organic anio... | XM_024449025.1 | 77.3% | 1.4% | (many diffs) |
| 13 | human | 53919 | SLCO1C1 | solute carrier organic anio... | XM_011520711.3 | 70.9% | 1.5% | (many diffs) |
| 14 | human | 53919 | SLCO1C1 | solute carrier organic anio... | XM_017019489.2 | 68.4% | 1.6% | (many diffs) |
| 15 | human | 53919 | SLCO1C1 | solute carrier organic anio... | XM_017019490.2 | 68.4% | 1.6% | (many diffs) |
| 16 | human | 53919 | SLCO1C1 | solute carrier organic anio... | XR_001748769.2 | 12.5% | (many diffs) | |
| 17 | human | 53919 | SLCO1C1 | solute carrier organic anio... | XR_001748770.2 | 12.5% | (many diffs) | |
| 18 | human | 53919 | SLCO1C1 | solute carrier organic anio... | XR_001748768.2 | 12.5% | (many diffs) | |
| 19 | human | 53919 | SLCO1C1 | solute carrier organic anio... | XR_001748771.2 | 12% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 189
- ORF length:
- 123
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga cacttcatca aagaaaatat ccagttgttc tgcaaaactt cagtgcaacc 121 tgttggaagg ccttctttta aaacagaata tccgtcctca gaagaaaagc aaccatgctg 181 tggtgaacta aaggtgttct tgtgtgcctt gtcttttgtt tactttgcca aagcattggc 241 agaaggctat ctgaagagca ccatcactca gatagagaga aggtttgata tcccttcttc 301 actggtggga gttattgatg gtagttttga aattgggaat ctcttagtta taacatttgt 361 tagctacttt ggagccaaac ttcacaggcc aaaaataatt ggagcagggt gtgtaatcat 421 gggagttgga acactgctaa ttgcaatgcc tcagttcttc atggagcagt acaaatatga 481 gagatattct ccttcctcca attccactct cagcatctct ccgtgtctcc tagagtcaag 541 cagtcaatta ccagtttcag ttatggaaaa atcaaaatcc aaaataagta acgaatgtga 601 agtggacact agctcttcca tgtggattta tgttttcctg ggcaatcttc ttcgtggaat 661 aggagaaact cccattcagc ctttgggcat tgcctacctg gatgattttg ccagtgaaga 721 caatgcagct ttctatattg ggtgtgtgca gacggttgca attataggac caatctttgg 781 tttcctgtta ggctcattat gtgccaaact atatgttgac attggctttg taaacctaga 841 tcacataacc attaccccaa aagatcccca gtgggtagga gcctggtggc ttggctatct 901 aatagcagga atcataagtc ttcttgcagc tgtgcctttc tggtatttac caaagagttt 961 accaagatcc caaagtagag aggattctaa ttcttcctct gagaaatcca agtttattat 1021 agatgatcac acagactacc aaacacccca gggagaaaat gcaaaaataa tggaaatggc 1081 aagagatttt cttccatcac tgaagaatct ttttggaaac ccagtatact tcctatattt 1141 atgtacaagc actgttcagt tcaattctct gttcggcatg gtgacgtaca aaccaaagta 1201 cattgagcag cagtatggac agtcatcctc cagggccaac tttgtgatcg ggctcatcaa 1261 cattccagca gtggcccttg gaatattctc tggggggata gttatgaaaa aattcagaat 1321 cagtgtgtgt ggagctgcaa aactctactt gggatcatct gtctttggtt acctcctatt 1381 tctttccctg tttgcactgg gctgtgaaaa ttctgatgtg gcaggactaa ctgtctccta 1441 ccaaggaacc aaacctgtct cttatcatga acgagctctc ttttcagatt gcaactcaag 1501 atgcaaatgt tcagagacaa aatgggaacc catgtgcggt gaaaatggaa tcacatatgt 1561 atcagcttgt cttgctggtt gtcaaacctc caacaggagt ggaaaaaata ttatatttta 1621 caactgcact tgtgtgggaa ttgcagcttc taaatccgga aattcctcag gcatagtggg 1681 aagatgtcag aaagacaatg gatgtcccca aatgtttctg tatttccttg taatttcagt 1741 catcacatcc tatactttat ccctaggtgg catacctgga tacatattac ttctgaggtg 1801 cattaagcca cagcttaagt cttttgcctt gggtatctac acattagcaa taagagttct 1861 tgcaggaatc ccagctccag tgtattttgg agttttgatt gatacttcat gcctcaaatg 1921 gggatttaaa agatgtggaa gtagaggatc atgcagatta tatgattcaa atgtcttcag 1981 acatatatat ttgggactaa ctgtgatact gggcacagtg tcaattctcc taagcattgc 2041 agtacttttc attttaaaga aaaattatgt ttcaaaacac agaagtttta taaccaagag 2101 agaaagaaca atggtgtcta caagattcca aaaggaaaat tacactacaa gtgatcatct 2161 gctacaaccc aactactggc caggcaagaa actcaacttt acccaacttt cttgtacaaa 2221 gtggttggta agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct 2281 agcgctaacc ggtggcgcgt taagtcgaca atcaacctct ggatta