Construct: ORF ccsbBroad304_14217

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012421.1_s304c1, BRDN0000400375
Derived from:
ccsbBroadEn_14217
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHA2 (56146)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14217
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56146 PCDHA2 protocadherin alpha 2 NM_031496.2 100% 100%
2 human 56146 PCDHA2 protocadherin alpha 2 NM_031495.2 97% 96.6% (many diffs)
3 human 56146 PCDHA2 protocadherin alpha 2 NM_018905.3 84.7% 84% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2490
ORF length:
2424
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gtcttctatc agaaggggcc gaggggcctg gacacggctg ctctcgcttc
121tgctcctcgc agcctgggag gtggggagcg gccagctccg ctactccgtc cccgaggagg
181ccaaacacgg caccttcgtg ggccgcatcg cgcaggacct ggggctggag ctggaggagc
241tggtgccgcg cctgttccgg gtggcgtcca aaagacacgg ggaccttctg gaggtaaatc
301tgcagaatgg cattttgttt gtgaattctc ggatcgaccg ggaggagctg tgcgggcgga
361gcgcggaatg tagcatccac gtggaggtga tcgtggacag gccgctgcag gttttccatg
421tggaagtgga ggtgaaggac attaacgaca acccgccaat atttccaatg acagtaaaga
481ctatccggtt tcccgaatca aggctgcttg attctcggtt tcctctagag ggagcatctg
541atgcagatat aggagtaaat gctcttctct cctacaagct cagctccagt gagtttttct
601tcctagatat acaggcaaat gatgaactaa gcgaatcttt gtctctcgtg ctggggaaat
661cgctggacag agaggaaact gctgaggtta atttgttact ggtggctact gatgggggca
721aacctgagct cacgggcacc gttcaaatac ttattaaggt attagatgta aatgacaatg
781aaccaacttt tgcccaatca gtttacaaag taaaattgtt agagaatacg gcaaatggga
841ccttagtggt taagttaaac gcttctgatg cagatgaagg accgaacagc gagattgtgt
901attcactcgg tagtgatgtg tcctccacta tacagactaa gtttaccata gatcccatct
961caggggaaat cagaactaag ggaaaattag attatgaaga agcaaagtcc tacgagattc
1021aggtcactgc aactgacaaa ggaacccctt caatgtcagg acattgtaaa atttcattaa
1081aacttgtgga catcaatgat aacacaccag aagtctcaat aacgtctctc tcacttccca
1141tctcagagaa cgcttccctg ggcactgtca ttgctctcat cacggtgtcg gatcgcgact
1201ctggtacgaa tggacatgtc acctgctccc tgacgcccca cgtccctttc aagctggtgt
1261ccaccttcaa gaattactac tcgttggtgc tggacagcgc cctggaccgc gagagcgtgt
1321cagcctatga gctggtggtg accgcacggg acgggggctc gccttcactg tgggccacca
1381ccagcgtgtc catcgaggtg gccgacgtga acgacaacgc gccggcgttc gcacagcctg
1441agtacacagt attcgtgaag gagaacaacc cgccgggctg ccacatcttc acggtgtcag
1501cgtgggatgc ggacgcgcag gagaacgcgc tggtgtccta ctcgctggtg gagcggcggg
1561tgggcgagcg cgcgttgtcg agctacgttt cggtgcacgc ggagagcggc aaggtgtacg
1621cgctgcagcc gctggaccac gaggaagtgg agctgctgca gttccaggtg agcgcgcggg
1681atgcgggcgt gccgcctctg ggcagcaacg tgacgctgca ggtgttcgtg ctggacgaga
1741acgacaacgc gccggcactg ttggcgccta gggctggcac cgctgctggc gcagtgagtg
1801agctggtgcc gtggtcggtg ggtgcagggc acgtggtggc gaaggtgcgc gcagtggacg
1861ctgactcagg ctacaacgcg tggctttcgt acgagcttca gctgggtact ggcagcgctc
1921gcatcccgtt ccgcgtgggg ctatacacgg gtgagatcag cacgacacgt gccctagacg
1981aggctgactc ccctcgacac cgcctactcg tgctggtgaa ggaccacggc gaaccagcgt
2041tgacagccac ggccaccgtg ttagtgtcgt tggtggaaag tggccaggca cccaaggcct
2101cgtcgcgggc gtgggtgggc gccgcgggct cagaggctac gctggtggat gtcaacgtgt
2161acctgatcat cgccatctgc gcggtatcca gcctgttggt gctcacggtg ctgctgtaca
2221ctgcgctgcg gtgctcggtg ccacccaccg agggtgcgcg cgcgccagga aagcccacgc
2281tggtgtgctc cagcgccgtg gggagctggt cttactcgca gcagaggcgg cagagggtgt
2341gctctgggga ggaccccccc aagacggacc tcatggcctt cagccctagc ttatctcaag
2401gtccagactc cgcagaagag aaacagctct cagaatcaga atacgtagga aagatatgga
2461acttcaatct tcaaatccag cttgcctctt cccaactttc ttgtacaaag tggttggtaa
2521gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta gcgctaaccg
2581gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)