Construct: ORF ccsbBroad304_14284

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002744.1_s304c1, BRDN0000402269
Derived from:
ccsbBroadEn_14284
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ULBP2 (80328)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14284
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80328 ULBP2 UL16 binding protein 2 NM_025217.4 99.7% 99.1% 369A>C;733delG
2 human 154064 RAET1L retinoic acid early transcr... NM_130900.3 95.9% 93.4% (many diffs)
3 human 80328 ULBP2 UL16 binding protein 2 XM_017011321.1 85.7% 85.3% 369A>C;631_632insCACCACTCGCCAT;633_634ins91
4 human 353091 RAET1G retinoic acid early transcr... XM_011535800.3 78.1% 71.2% (many diffs)
5 human 353091 RAET1G retinoic acid early transcr... NM_001001788.4 69.4% 63.3% (many diffs)
6 human 353091 RAET1G retinoic acid early transcr... XM_017010831.2 68.6% 62.6% (many diffs)
7 human 353091 RAET1G retinoic acid early transcr... NR_130110.2 62% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
804
ORF length:
738
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc agcagccgcc gctaccaaga tccttctgtg cctcccgctt ctgctcctgc
121tgtccggctg gtcccgggct gggcgagccg accctcactc tctttgctat gacatcaccg
181tcatccctaa gttcagacct ggaccacggt ggtgtgcggt tcaaggccag gtggatgaaa
241agacttttct tcactatgac tgtggcaaca agacagtcac acctgtcagt cccctgggga
301agaaactaaa tgtcacaacg gcctggaaag cacagaaccc agtactgaga gaggtggtgg
361acatacttac agagcaactg cgtgacattc agctggagaa ttacacaccc aaggaacccc
421tcaccctgca ggccaggatg tcttgtgagc agaaagctga aggacacagc agtggatctt
481ggcagttcag tttcgatggg cagatcttcc tcctctttga ctcagagaag agaatgtgga
541caacggttca tcctggagcc agaaagatga aagaaaagtg ggagaatgac aaggttgtgg
601ccatgtcctt ccattacttc tcaatgggag actgtatagg atggcttgag gacttcttga
661tgggcatgga cagcaccctg gagccaagtg caggagcacc actcgccatg tcctcaggca
721caacccaact cagggccaca gccaccaccc tcatcctttg ctgcctcctc atcatcctcc
781cctgcttcat cctccctgca tctgcccaac tttcttgtac aaagtggttg gtaagcctat
841ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta accggtggcg
901cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)

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