Construct: ORF ccsbBroad304_14456

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015374.1_s304c1, BRDN0000399830
Derived from:
ccsbBroadEn_14456
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BOD1L1 (259282)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14456
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 259282 BOD1L1 biorientation of chromosome... XM_011513830.3 9.7% 9.6% (many diffs)
2 human 259282 BOD1L1 biorientation of chromosome... NM_148894.3 9.2% 9.2% 1_8301del;9137T>N
3 human 259282 BOD1L1 biorientation of chromosome... XM_017008010.1 9.2% 9.2% 1_8301del;8668_8669insAAG;9134T>N
4 human 259282 BOD1L1 biorientation of chromosome... XM_011513829.2 9.2% 9.1% 1_8301del;8750_8794del;9182T>N
5 human 259282 BOD1L1 biorientation of chromosome... XM_017008009.1 9.2% 9.1% (many diffs)
6 human 259282 BOD1L1 biorientation of chromosome... XM_005248150.3 9.1% 9.1% 1_8301del;9037_9177del;9278T>N
7 human 259282 BOD1L1 biorientation of chromosome... XM_005248151.3 9.1% 9% (many diffs)
8 human 259282 BOD1L1 biorientation of chromosome... XM_011513827.2 9.1% 9% (many diffs)
9 human 259282 BOD1L1 biorientation of chromosome... XM_006713958.3 9% 8.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
918
ORF length:
852
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc taaaagaaaa agaaagcagc attatctctc ttcagaagat gaaccagatg
121ataatccaga tgtcctggat tccagaatag aaacagcaca aaggcagtgt cctgaaacgg
181agccacatga cacaaaggaa gagaactcca gagatttgga agaattacct aaaaccagtt
241ctgagacaaa tagcactacc tcaagggtca tggaagaaaa agatgaatat agcagcagtg
301aaactactgg tgaaaagcca gagcagaacg atgatgacac cataaaatct caggaggaag
361atcagccaat aattattaaa aggaaaagag gaagacctcg caaataccct gtagaaacaa
421cgttaaaaat gaaagacgac tccaaaacag atactggcat tgtcactgta gaacaatctc
481catctagcag caaactgaaa gtaatgcaaa cagatgaatc caataaagaa acagctaacc
541tacaagaaag aagtataagc aatgatgatg gtgaagaaaa aatagtaaca agtgtgcgtc
601ggagaggaag aaaacccaaa cgttctctca ctgtatcaga tgatgctgaa tcctcagagc
661cagaaagaaa acgccagaaa tcagtttctg atccagtgga ggacaagaaa gagcaggagt
721ctgatgagga agaggaagaa gaggaagagg acgagccttc aggagccacc acaagatcca
781ccaccagatc agaggctcag agatcaaaga cacagctctc cccttctatc aagcgcaaga
841gagaagtcag ccctcctggg gcccgaacaa gaggccagca aagggtggag gaagcccctg
901ngaaaaaagc gaagcgatac ccaactttct tgtacaaagt ggttggtaag cctatcccta
961accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1021agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)

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