Construct: ORF ccsbBroad304_15603
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011469.1_s304c1, BRDN0000406068
- Derived from:
- ccsbBroadEn_15603
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TAF9 (6880)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15603
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 102157402 | AK6 | adenylate kinase 6 | NM_016283.5 | 100% | 100% | |
| 2 | human | 102157402 | AK6 | adenylate kinase 6 | NM_001015891.2 | 97% | 92.6% | (many diffs) |
| 3 | mouse | 102216272 | Ak6 | adenylate kinase 6 | NM_027592.3 | 86.6% | 87.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 582
- ORF length:
- 516
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgtt gcttccgaac atcctgctca ccggtacacc aggggttgga aaaaccacac 121 taggcaaaga acttgcgtca aaatcaggac tgaaatacat taatgtgggt gatttagctc 181 gagaagagca attgtatgat ggctatgatg aagagtatga ctgtcccatt ttagatgaag 241 acagagtagt tgatgagtta gataaccaaa tgagagaagg tggagttatt gttgattacc 301 atggttgtga tttcttccct gaacgctggt ttcatatagt ttttgtgctg agaacagata 361 ccaatgtatt gtacgaaaga cttgaaacaa ggggttataa tgagaagaaa ctaacagaca 421 atattcagtg tgagattttt caagttcttt atgaagaagc cacagcatcc tacaaggaag 481 aaatcgtgca tcagctgccc agtaataaac cagaagagct agaaaataat gtagatcaga 541 tcttgaaatg gattgagcag tggatcaaag atcataactc ttnnccaact ttcttgtaca 601 aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag 661 ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta