Construct: ORF ccsbBroadEn_00006

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004848.1_s300c1, BRDN0000392704
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ACADM (34)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 34 ACADM acyl-CoA dehydrogenase medi... NM_000016.5 100% 100%
2 human 34 ACADM acyl-CoA dehydrogenase medi... NM_001127328.2 99% 99% 30_41del
3 human 34 ACADM acyl-CoA dehydrogenase medi... NM_001286043.1 92.7% 92.7% 285_383del
4 human 34 ACADM acyl-CoA dehydrogenase medi... NM_001286042.1 91.1% 90.7% (many diffs)
5 human 34 ACADM acyl-CoA dehydrogenase medi... NM_001286044.1 55.1% 55.1% 0_1ins567
6 mouse 11364 Acadm acyl-Coenzyme A dehydrogena... NM_007382.5 82.6% 87.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1329
ORF length:
1263
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC AGCGGGGTTC GGGCGATGCT GCAGGGTCCT GAGAAGTATT TCTCGTTTTC
121ATTGGAGATC ACAGCATACA AAAGCCAATC GACAACGTGA ACCAGGATTA GGATTTAGTT
181TTGAGTTCAC CGAACAGCAG AAAGAATTTC AAGCTACTGC TCGTAAATTT GCCAGAGAGG
241AAATCATCCC AGTGGCTGCA GAATATGATA AAACTGGTGA ATATCCAGTC CCCCTAATTA
301GAAGAGCCTG GGAACTTGGT TTAATGAACA CACACATTCC AGAGAACTGT GGAGGTCTTG
361GACTTGGAAC TTTTGATGCT TGTTTAATTA GTGAAGAATT GGCTTATGGA TGTACAGGGG
421TTCAGACTGC TATTGAAGGA AATTCTTTGG GGCAAATGCC TATTATTATT GCTGGAAATG
481ATCAACAAAA GAAGAAGTAT TTGGGGAGAA TGACTGAGGA GCCATTGATG TGTGCTTATT
541GTGTAACAGA ACCTGGAGCA GGCTCTGATG TAGCTGGTAT AAAGACCAAA GCAGAAAAGA
601AAGGAGATGA GTATATTATT AATGGTCAGA AGATGTGGAT AACCAACGGA GGAAAAGCTA
661ATTGGTATTT TTTATTGGCA CGTTCTGATC CAGATCCTAA AGCTCCTGCT AATAAAGCCT
721TTACTGGATT CATTGTGGAA GCAGATACCC CAGGAATTCA GATTGGGAGA AAGGAATTAA
781ACATGGGCCA GCGATGTTCA GATACTAGAG GAATTGTCTT CGAAGATGTG AAAGTGCCTA
841AAGAAAATGT TTTAATTGGT GACGGAGCTG GTTTCAAAGT TGCAATGGGA GCTTTTGATA
901AAACCAGACC TGTAGTAGCT GCTGGTGCTG TTGGATTAGC ACAAAGAGCT TTGGATGAAG
961CTACCAAGTA TGCCCTGGAA AGGAAAACTT TCGGAAAGCT ACTTGTAGAG CACCAAGCAA
1021TATCATTTAT GCTGGCTGAA ATGGCAATGA AAGTTGAACT AGCTAGAATG AGTTACCAGA
1081GAGCAGCTTG GGAGGTTGAT TCTGGTCGTC GAAATACCTA TTATGCTTCT ATTGCAAAGG
1141CATTTGCTGG AGATATTGCA AATCAGTTAG CTACTGATGC TGTGCAGATA CTTGGAGGCA
1201ATGGATTTAA TACAGAATAT CCTGTAGAAA AACTAATGAG GGATGCCAAA ATCTATCAGA
1261TTTATGAAGG TACTTCACAA ATTCAAAGAC TTATTGTAGC CCGTGAACAC ATTGACAAGT
1321ACAAAAATTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
1381tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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