Construct: ORF ccsbBroadEn_00334
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018008.1_s300c1, BRDN0000386174
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ACKR2 (1238)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1238 | ACKR2 | atypical chemokine receptor 2 | NM_001296.5 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1218
- ORF length:
- 1152
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CGCCACTGCC TCTCCGCAGC CACTCGCCAC TGAGGATGCC GATTCTGAGA 121 ATAGCAGCTT CTATTACTAT GACTACCTGG ATGAAGTGGC CTTCATGCTC TGCAGGAAGG 181 ATGCAGTGGT GTCCTTTGGC AAAGTCTTCC TCCCAGTCTT CTATAGCCTG ATTTTTGTGT 241 TGGGCCTCAG CGGGAACCTC CTTCTTCTCA TGGTCTTGCT CCGTTACGTG CCTCGCAGGC 301 GGATGGTTGA GATCTATCTG CTGAATCTGG CCATCTCCAA CCTTCTGTTT CTGGTGACAC 361 TGCCCTTCTG GGGCATCTCC GTGGCCTGGC ATTGGGTCTT CGGGAGTTTC TTGTGCAAGA 421 TGGTGAGCAC TCTTTATACT ATTAACTTTT ACAGTGGCAT CTTTTTCATT AGCTGCATGA 481 GCCTGGACAA GTACCTGGAG ATCGTTCATG CTCAGCCCTA CCACAGGCTG AGGACCCGGG 541 CCAAGAGCCT GCTCCTTGCT ACCATAGTAT GGGCTGTGTC CCTGGCCGTC TCCATCCCTG 601 ATATGGTCTT TGTACAGACA CATGAAAATC CCAAGGGTGT GTGGAACTGC CACGCAGATT 661 TCGGCGGGCA TGGGACCATT TGGAAGCTCT TCCTCCGCTT CCAGCAGAAC CTCCTAGGGT 721 TTCTCCTTCC ACTCCTTGCC ATGATCTTCT TCTACTCCCG TATTGGTTGT GTCTTGGTGA 781 GGCTGAGGCC CGCAGGCCAG GGCCGGGCTT TAAAAATAGC TGCAGCCTTG GTGGTGGCCT 841 TCTTCGTGCT ATGGTTCCCA TACAATCTCA CCTTGTTTCT GCATACGCTG TTGGACCTGC 901 AAGTATTCGG GAACTGTGAG GTCAGCCAGC ATCTAGACTA CGCACTCCAG GTAACAGAGA 961 GCATCGCCTT CCTTCACTGC TGCTTTTCCC CCATCCTGTA TGCCTTCTCC AGTCACCGCT 1021 TCCGCCAGTA CCTGAAGGCT TTCCTGGCTG CCGTGCTTGG ATGGCACCTG GCACCTGGCA 1081 CTGCCCAGGC CTCATTATCC AGCTGTTCTG AGAGCAGCAT ACTTACTGCC CAAGAGGAAA 1141 TGACTGGCAT GAATGACCTT GGAGAGAGGC AGTCTGAGAA CTACCCTAAC AAGGAGGATG 1201 TGGGGAATAA ATCAGCCTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1261 gcttatcaat ttgttgcaac gaac