Construct: ORF ccsbBroadEn_00573
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009704.1_s300c1, BRDN0000389272
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FKBP4 (2288)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2288 | FKBP4 | FKBP prolyl isomerase 4 | NM_002014.4 | 100% | 100% | |
| 2 | human | 2288 | FKBP4 | FKBP prolyl isomerase 4 | XM_011520929.2 | 90.1% | 90.1% | 0_1ins135 |
| 3 | mouse | 14228 | Fkbp4 | FK506 binding protein 4 | NM_010219.3 | 87.4% | 89.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1443
- ORF length:
- 1377
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC AGCCGAGGAG ATGAAGGCGA CCGAGAGCGG GGCGCAGTCG GCGCCGCTGC 121 CCATGGAGGG AGTGGACATC AGCCCCAAAC AGGACGAAGG CGTGCTGAAG GTCATCAAGA 181 GAGAGGGCAC AGGTACAGAG ATGCCCATGA TTGGGGACCG AGTCTTTGTC CACTACACTG 241 GCTGGCTATT AGATGGCACA AAGTTTGACT CCAGTCTGGA TCGCAAGGAC AAATTCTCCT 301 TTGACCTGGG AAAAGGGGAG GTCATCAAGG CTTGGGACAT TGCCATAGCC ACCATGAAGG 361 TGGGGGAGGT GTGCCACATC ACCTGCAAAC CAGAATATGC CTACGGTTCA GCAGGCAGTC 421 CTCCAAAGAT TCCCCCCAAT GCCACGCTTG TATTTGAGGT GGAGTTGTTT GAGTTTAAGG 481 GAGAAGATCT GACGGAAGAG GAAGATGGCG GAATCATTCG CAGAATACAG ACTCGCGGTG 541 AAGGCTATGC TAAGCCCAAT GAGGGTGCTA TCGTGGAGGT TGCACTGGAA GGGTACTACA 601 AGGACAAGCT CTTTGACCAG CGGGAGCTCC GCTTTGAGAT TGGCGAGGGG GAGAACCTGG 661 ATCTGCCTTA TGGTCTGGAG AGGGCCATTC AGCGCATGGA GAAAGGAGAA CATTCCATCG 721 TGTACCTCAA GCCCAGCTAT GCTTTTGGCA GTGTTGGGAA GGAAAAGTTC CAAATCCCAC 781 CAAATGCTGA GCTGAAATAT GAATTACACC TCAAGAGTTT TGAAAAGGCC AAGGAGTCTT 841 GGGAGATGAA TTCAGAAGAG AAGCTGGAAC AGAGCACCAT AGTGAAAGAG CGGGGCACTG 901 TGTACTTCAA GGAAGGTAAA TACAAGCAAG CTTTACTACA GTATAAGAAG ATCGTGTCTT 961 GGCTGGAATA TGAGTCTAGT TTTTCCAATG AGGAAGCACA GAAAGCACAG GCCCTTCGAC 1021 TGGCCTCTCA CCTCAACCTG GCCATGTGTC ATCTGAAACT ACAGGCCTTC TCTGCTGCCA 1081 TTGAAAGCTG TAACAAGGCC CTAGAACTGG ACAGCAACAA CGAGAAGGGC CTCTTCCGCC 1141 GGGGAGAGGC CCACCTGGCC GTGAATGACT TTGAACTGGC ACGGGCTGAT TTCCAGAAGG 1201 TCCTGCAGCT CTACCCCAAC AACAAAGCCG CCAAGACCCA GCTGGCTGTG TGCCAGCAGC 1261 GGATCCGAAG GCAGCTTGCC CGGGAGAAGA AGCTCTATGC CAATATGTTT GAGAGGCTGG 1321 CTGAGGAGGA GAACAAGGCC AAGGCAGAGG CTTCCTCAGG AGACCATCCC ACTGACACAG 1381 AGATGAAGGA GGAGCAGAAG AGCAACACGG CAGGGAGCCA GTCTCAGGTG GAGACAGAAG 1441 CATACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1501 gcaacgaac