Construct: ORF ccsbBroadEn_00595

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018447.1_s300c1, BRDN0000389624
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NR5A1 (2516)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2516 NR5A1 nuclear receptor subfamily ... NM_004959.5 100% 100%
2 mouse 26423 Nr5a1 nuclear receptor subfamily ... NM_001316687.1 88.3% 93.5% (many diffs)
3 mouse 26423 Nr5a1 nuclear receptor subfamily ... NM_139051.3 88.3% 93.5% (many diffs)
4 mouse 26423 Nr5a1 nuclear receptor subfamily ... XM_006498056.3 81.9% 86.7% (many diffs)
5 mouse 26423 Nr5a1 nuclear receptor subfamily ... XM_006498057.3 81.9% 86.7% (many diffs)
6 mouse 26423 Nr5a1 nuclear receptor subfamily ... XM_006498058.3 81.9% 86.7% (many diffs)
7 mouse 26423 Nr5a1 nuclear receptor subfamily ... XM_006498059.3 81.9% 86.7% (many diffs)
8 mouse 26423 Nr5a1 nuclear receptor subfamily ... XM_006498060.3 81.9% 86.7% (many diffs)
9 mouse 26423 Nr5a1 nuclear receptor subfamily ... XM_017318656.1 61.6% 59.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1449
ORF length:
1383
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CTATTCGTAC GACGAGGACC TGGACGAGCT GTGCCCCGTG TGCGGGGACA
121AGGTGTCCGG CTACCACTAC GGACTGCTCA CGTGTGAGAG CTGCAAGGGC TTCTTCAAGC
181GCACGGTGCA GAACAACAAG CACTACACGT GCACCGAGAG CCAGAGCTGC AAGATCGACA
241AGACGCAGCG CAAGCGCTGT CCCTTCTGCC GCTTCCAGAA ATGCCTGACG GTGGGGATGC
301GCCTGGAAGC CGTGCGCGCT GACCGTATGA GGGGTGGCCG GAACAAGTTT GGGCCGATGT
361ACAAGCGGGA CCGGGCCCTG AAACAGCAGA AGAAGGCACA GATTCGGGCC AATGGCTTCA
421AGCTGGAGAC AGGGCCCCCG ATGGGGGTGC CCCCGCCGCC CCCTCCCGCA CCGGACTACG
481TGCTGCCTCC CAGCCTGCAT GGGCCTGAGC CCAAGGGCCT GGCCGCCGGT CCACCTGCTG
541GGCCACTGGG CGACTTTGGG GCCCCAGCAC TGCCCATGGC CGTGCCCGGT GCCCACGGGC
601CACTGGCTGG CTACCTCTAC CCTGCCTTTC CTGGCCGTGC CATCAAGTCT GAGTACCCGG
661AGCCTTATGC CAGCCCCCCA CAGCCTGGGC TGCCGTACGG CTACCCAGAG CCCTTCTCTG
721GAGGGCCCAA CGTGCCTGAG CTCATCCTGC AGCTGCTGCA GCTGGAGCCG GATGAGGACC
781AGGTGCGGGC CCGCATCTTG GGCTGCCTGC AGGAGCCCAC CAAAAGCCGC CCCGACCAGC
841CGGCGGCCTT CGGCCTCCTG TGCAGAATGG CCGACCAGAC CTTCATCTCC ATCGTGGACT
901GGGCACGCAG GTGCATGGTC TTCAAGGAGC TGGAGGTGGC CGACCAGATG ACGCTGCTGC
961AGAACTGCTG GAGCGAGCTG CTGGTGTTCG ACCACATCTA CCGCCAGGTC CAGCACGGCA
1021AGGAGGGCAG CATCCTGCTG GTCACCGGGC AGGAGGTGGA GCTGACCACA GTGGCCACCC
1081AGGCGGGCTC GCTGCTGCAC AGCCTGGTGT TGCGGGCGCA GGAGCTGGTG CTGCAGCTGC
1141TTGCGCTGCA GCTGGACCGG CAGGAGTTTG TCTGCCTCAA GTTCATCATC CTCTTCAGCC
1201TGGATTTGAA GTTCCTGAAT AACCACATCC TGGTGAAAGA CGCTCAGGAG AAGGCCAACG
1261CCGCCCTGCT TGACTACACC CTGTGCCACT ACCCGCACTG CGGGGACAAA TTCCAGCAGC
1321TGCTGCTGTG CCTGGTGGAG GTGCGGGCCC TGAGCATGCA GGCCAAGGAG TACCTGTACC
1381ACAAGCACCT GGGCAACGAG ATGCCCCGCA ACAACCTGCT CATCGAAATG CTGCAAGCCA
1441AGCAGACTTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
1501tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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