Construct: ORF ccsbBroadEn_00618
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012270.1_s300c1, BRDN0000386108
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NIPSNAP2 (2631)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2631 | NIPSNAP2 | nipsnap homolog 2 | NM_001483.3 | 100% | 100% | |
| 2 | human | 2631 | NIPSNAP2 | nipsnap homolog 2 | NM_001202469.2 | 86.3% | 79% | 232_233ins46;326_327ins71 |
| 3 | mouse | 14467 | Nipsnap2 | nipsnap homolog 2 | NM_008095.4 | 84.5% | 90.5% | (many diffs) |
| 4 | mouse | 14467 | Nipsnap2 | nipsnap homolog 2 | XR_377052.3 | 32.9% | (many diffs) | |
| 5 | mouse | 14467 | Nipsnap2 | nipsnap homolog 2 | XR_377051.3 | 32.7% | (many diffs) | |
| 6 | mouse | 14467 | Nipsnap2 | nipsnap homolog 2 | XR_377054.3 | 31.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 924
- ORF length:
- 858
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCGCGAGTG CTGCGCGCCC GCGGAGCGGC CTGGGCCGGC GGCCTCCTGC 121 AGCGGGCGGC CCCCTGCAGC CTCCTGCCCA GGCTCCGGAC ATGGACATCT TCCAGCAACA 181 GATCTCGAGA AGACAGCTGG CTAAAATCCT TATTTGTCCG GAAAGTTGAT CCAAGAAAAG 241 ATGCCCACTC CAATCTCCTA GCCAAAAAGG AAACAAGCAA TCTATACAAA TTACAGTTTC 301 ACAATGTTAA ACCGGAATGC CTAGAAGCAT ACAACAAAAT TTGTCAAGAG GTGTTGCCAA 361 AGATTCACGA AGATAAACAC TACCCTTGTA CTTTGGTGGG GACTTGGAAC ACGTGGTATG 421 GCGAGCAGGA CCAAGCTGTC CACCTCTGGA GGTATGAAGG AGGCTATCCA GCCCTCACAG 481 AAGTCATGAA TAAACTCAGA GAAAATAAGG AATTTTTGGA ATTTCGTAAG GCAAGAAGTG 541 ACATGCTTCT CTCCAGGAAG AATCAGCTCC TGTTGGAGTT CAGTTTCTGG AATGAGCCTG 601 TGCCAAGATC CGGACCTAAT ATATATGAAC TCAGGTCTTA CCAACTCCGA CCAGGAACCA 661 TGATTGAATG GGGCAATTAC TGGGCTCGTG CAATCCGCTT CAGACAGGAT GGTAACGAAG 721 CCGTCGGAGG ATTCTTCTCT CAGATTGGGC AGCTGTACAT GGTGCACCAT CTTTGGGCTT 781 ACAGGGATCT TCAGACCAGG GAAGACATAC GGAATGCAGC ATGGCACAAA CATGGCTGGG 841 AGGAATTGGT ATATTACACA GTTCCACTTA TTCAGGAAAT GGAATCCAGA ATCATGATCC 901 CACTGAAGAC CTCGCCCCTC CAGTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 961 agcattgctt atcaatttgt tgcaacgaac