Construct: ORF ccsbBroadEn_00649
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017158.1_s300c1, BRDN0000398036
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GML (2765)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2765 | GML | glycosylphosphatidylinosito... | NM_002066.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 543
- ORF length:
- 474
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCTCCTCTTT GCCTTACTCC TAGCCATGGA GCTCCCATTG GTGGCAGCCA 121 GTGCCACCAT GCGCGCTCAG TGGACTTACA GTTTGAGATG CCATGACTGT GCGGTCATAA 181 ATGACTTCAA CTGTCCCAAC ATTAGAGTAT GTCCGTATCA TATTAGGCGC TGTATGACAA 241 TCTCCATTCG CATAAATTCT CGTGAACTAC TTGTTTATAA GAACTGTACA AACAACTGCA 301 CATTTGTATA TGCAGCTGAA CAGCCTCCTG AAGCCCCAGG AAAAATCTTC AAAACTAATA 361 GCTTCTACTG GGTTTGTTGT TGTAATAGCA TGGTTTGCAA TGCAGGAGGA CCTACTAATC 421 TTGAAAGGGA CATGTTACCC GATGAAGTAA CTGAGGAGGA GCTTCCAGAA GGAACTGTGA 481 GGCTGGGGGT ATCAAAACTG TTGCTGAGTT TTGCCTCTAT CATAGTCAGC AATATATTGC 541 CATTGCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 601 gcaacgaac