Construct: ORF ccsbBroadEn_00815
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004837.1_s300c1, BRDN0000396118
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ID2 (3398)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3398 | ID2 | inhibitor of DNA binding 2 | NM_002166.5 | 100% | 100% | |
| 2 | mouse | 15902 | Id2 | inhibitor of DNA binding 2 | NM_010496.3 | 95% | 98.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 468
- ORF length:
- 402
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA AGCCTTCAGT CCCGTGAGGT CCGTTAGGAA AAACAGCCTG TCGGACCACA 121 GCCTGGGCAT CTCCCGGAGC AAAACCCCTG TGGACGACCC GATGAGCCTG CTATACAACA 181 TGAACGACTG CTACTCCAAG CTCAAGGAGC TGGTGCCCAG CATCCCCCAG AACAAGAAGG 241 TGAGCAAGAT GGAAATCCTG CAGCACGTCA TCGACTACAT CTTGGACCTG CAGATCGCCC 301 TGGACTCGCA TCCCACTATT GTCAGCCTGC ATCACCAGAG ACCCGGGCAG AACCAGGCGT 361 CCAGGACGCC GCTGACCACC CTCAACACGG ATATCAGCAT CCTGTCCTTG CAGGCTTCTG 421 AATTCCCTTC TGAGTTAATG TCAAATGACA GCAAAGCACT GTGTGGCTGC CCAACTTTCT 481 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac