Construct: ORF ccsbBroadEn_00917

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005356.1_s300c1, BRDN0000393212
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KRT6A (3853)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3853 KRT6A keratin 6A NM_005554.4 100% 100%
2 human 286887 KRT6C keratin 6C NM_173086.5 97.9% 98.4% (many diffs)
3 human 3854 KRT6B keratin 6B NM_005555.4 97.5% 98.5% (many diffs)
4 mouse 16687 Krt6a keratin 6A NM_008476.3 85.8% 86.3% (many diffs)
5 mouse 16688 Krt6b keratin 6B NM_010669.2 85.5% 84.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1758
ORF length:
1692
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CAGCACATCC ACCACCATCA GGAGCCACAG CAGCAGCCGC CGGGGTTTCA
121GTGCCAACTC AGCCAGGCTC CCTGGGGTCA GCCGCTCTGG CTTCAGCAGC GTCTCCGTGT
181CCCGCTCCAG GGGCAGTGGT GGCCTGGGTG GTGCATGTGG AGGAGCTGGC TTTGGCAGCC
241GCAGTCTGTA TGGCCTGGGG GGCTCCAAGA GGATCTCCAT TGGAGGGGGC AGCTGTGCCA
301TCAGTGGCGG CTATGGCAGC AGAGCCGGAG GCAGCTATGG CTTTGGTGGC GCCGGGAGTG
361GATTTGGTTT CGGTGGTGGA GCCGGCATTG GCTTTGGTCT GGGTGGTGGA GCCGGCCTTG
421CTGGTGGCTT TGGGGGCCCT GGCTTCCCTG TGTGCCCCCC TGGAGGCATC CAAGAGGTCA
481CCGTCAACCA GAGTCTCCTG ACTCCCCTCA ACCTGCAAAT CGATCCCACC ATCCAGCGGG
541TGCGGGCTGA GGAGCGTGAA CAGATCAAGA CCCTCAACAA CAAGTTTGCC TCCTTCATCG
601ACAAGGTGCG GTTCCTGGAG CAGCAGAACA AGGTTCTGGA AACAAAGTGG ACCCTGCTGC
661AGGAGCAGGG CACCAAGACT GTGAGGCAGA ACCTGGAGCC GTTGTTCGAG CAGTACATCA
721ACAACCTCAG GAGGCAGCTG GACAGCATTG TCGGGGAACG GGGCCGCCTG GACTCAGAGC
781TCAGAGGCAT GCAGGACCTG GTGGAGGACT TCAAGAACAA ATATGAGGAT GAAATCAACA
841AGCGCACAGC AGCAGAGAAT GAATTTGTGA CTCTGAAGAA GGATGTGGAT GCTGCCTACA
901TGAACAAGGT TGAACTGCAA GCCAAGGCAG ACACTCTCAC AGACGAGATC AACTTCCTGA
961GAGCCTTGTA TGATGCAGAG CTGTCCCAGA TGCAGACCCA CATCTCAGAC ACATCTGTGG
1021TGCTGTCCAT GGACAACAAC CGCAACCTGG ACCTGGACAG CATCATCGCT GAGGTCAAGG
1081CCCAATATGA GGAGATTGCT CAGAGAAGCC GGGCTGAGGC TGAGTCCTGG TACCAGACCA
1141AGTACGAGGA GCTGCAGGTC ACAGCAGGCA GACATGGGGA CGACCTGCGC AACACCAAGC
1201AGGAGATTGC TGAGATCAAC CGCATGATCC AGAGGCTGAG ATCTGAGATC GACCACGTCA
1261AGAAGCAGTG CGCCAACCTG CAGGCCGCCA TTGCTGATGC TGAGCAGCGT GGGGAGATGG
1321CCCTCAAGGA TGCCAAGAAC AAGCTGGAAG GGCTGGAGGA TGCCCTGCAG AAGGCCAAGC
1381AGGACCTGGC CCGGCTGCTG AAGGAGTACC AGGAGCTGAT GAATGTCAAG CTGGCCCTGG
1441ACGTGGAGAT CGCCACCTAC CGCAAGCTGC TGGAGGGTGA GGAGTGCAGG CTGAATGGCG
1501AAGGCGTTGG ACAAGTCAAC ATCTCTGTGG TGCAGTCCAC CGTCTCCAGT GGCTATGGCG
1561GTGCCAGTGG TGTCGGCAGT GGCTTAGGCC TGGGTGGAGG AAGCAGCTAC TCCTATGGCA
1621GTGGTCTTGG CGTTGGAGGT GGCTTCAGTT CCAGCAGTGG CAGAGCCATT GGGGGTGGCC
1681TCAGCTCTGT TGGAGGCGGC AGTTCCACCA TCAAGTACAC CACCACCTCC TCCTCCAGCA
1741GGAAGAGCTA TAAGCACTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1801gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)