Construct: ORF ccsbBroadEn_01201
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009121.1_s300c1, BRDN0000394884
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PIGR (5284)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5284 | PIGR | polymeric immunoglobulin re... | NM_002644.4 | 100% | 100% | |
| 2 | human | 5284 | PIGR | polymeric immunoglobulin re... | XM_011509629.1 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2361
- ORF length:
- 2292
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCTGCTCTTC GTGCTCACCT GCCTGCTGGC GGTCTTCCCA GCCATCTCCA 121 CGAAGAGTCC CATATTTGGT CCCGAGGAGG TGAATAGTGT GGAAGGTAAC TCAGTGTCCA 181 TCACGTGCTA CTACCCACCC ACCTCTGTCA ACCGGCACAC CCGGAAGTAC TGGTGCCGGC 241 AGGGAGCTAG AGGTGGCTGC ATAACCCTCA TCTCCTCGGA GGGCTACGTC TCCAGCAAAT 301 ATGCAGGCAG GGCTAACCTC ACCAACTTCC CGGAGAACGG CACATTTGTG GTGAACATTG 361 CCCAGCTGAG CCAGGATGAC TCCGGGCGCT ACAAGTGTGG CCTGGGCATC AATAGCCGAG 421 GCCTGTCCTT TGATGTCAGC CTGGAGGTCA GCCAGGGTCC TGGGCTCCTA AATGACACTA 481 AAGTCTACAC AGTGGACCTG GGCAGAACGG TGACCATCAA CTGCCCTTTC AAGACTGAGA 541 ATGCTCAAAA GAGGAAGTCC TTGTACAAGC AGATAGGCCT GTACCCTGTG CTGGTCATCG 601 ACTCCAGTGG TTATGTAAAT CCCAACTATA CAGGAAGAAT ACGCCTTGAT ATTCAGGGTA 661 CTGGCCAGTT ACTGTTCAGC GTTGTCATCA ACCAACTCAG GCTCAGCGAT GCTGGGCAGT 721 ATCTCTGCCA GGCTGGGGAT GATTCCAATA GTAATAAGAA GAATGCTGAC CTCCAAGTGC 781 TAAAGCCCGA GCCCGAGCTG GTTTATGAAG ACCTGAGGGG CTCAGTGACC TTCCACTGTG 841 CCCTGGGCCC TGAGGTGGCA AACGTGGCCA AATTTCTGTG CCGACAGAGC AGTGGGGAAA 901 ACTGTGACGT GGTCGTCAAC ACCCTGGGGA AGAGGGCCCC AGCCTTTGAG GGCAGGATCC 961 TGCTCAACCC CCAGGACAAG GATGGCTCAT TCAGTGTGGT GATCACAGGC CTGAGGAAGG 1021 AGGATGCAGG GCGCTACCTG TGTGGAGCCC ATTCGGATGG TCAGCTGCAG GAAGGCTCGC 1081 CTATCCAGGC CTGGCAACTC TTCGTCAATG AGGAGTCCAC GATTCCCCGC AGCCCCACTG 1141 TGGTGAAGGG GGTGGCAGGA GGCTCTGTGG CCGTGCTCTG CCCCTACAAC CGTAAGGAAA 1201 GCAAAAGCAT CAAGTACTGG TGTCTCTGGG AAGGGGCCCA GAATGGCCGC TGCCCCCTGC 1261 TGGTGGACAG CGAGGGGTGG GTTAAGGCCC AGTACGAGGG CCGCCTCTCC CTGCTGGAGG 1321 AGCCAGGCAA CGGCACCTTC ACTGTCATCC TCAACCAGCT CACCAGCCGG GACGCCGGCT 1381 TCTACTGGTG TCTGACCAAC GGCGATACTC TCTGGAGGAC CACCGTGGAG ATCAAGATTA 1441 TCGAAGGAGA ACCAAACCTC AAGGTACCAG GGAATGTCAC GGCTGTGCTG GGAGAGACTC 1501 TCAAGGTCCC CTGTCACTTT CCATGCAAAT TCTCCTCGTA CGAGAAATAC TGGTGCAAGT 1561 GGAATAACAC GGGCTGCCAG GCCCTGCCCA GCCAAGACGA AGGCCCCAGC AAGGCCTTCG 1621 TGAACTGTGA CGAGAACAGC CGGCTTGTCT CCCTGACCCT GAACCTGGTG ACCAGGGCTG 1681 ATGAGGGCTG GTACTGGTGT GGAGTGAAGC AGGGCCACTT CTATGGAGAG ACTGCAGCCG 1741 TCTATGTGGC AGTTGAAGAG AGGAAGGCAG CGGGGTCCCG CGATGTCAGC CTAGCGAAGG 1801 CAGACGCTGC TCCTGATGAG AAGGTGCTAG ACTCTGGTTT TCGGGAGATT GAGAACAAAG 1861 CCATTCAGGA TCCCAGGCTT TTTGCAGAGG AAAAGGCGGT GGCAGATACA AGAGATCAAG 1921 CCGATGGGAG CAGAGCATCT GTGGATTCCG GCAGCTCTGA GGAACAAGGT GGAAGCTCCA 1981 GAGCGCTGGT CTCCACCCTG GTGCCCCTGG GCCTGGTGCT GGCAGTGGGA GCCGTGGCTG 2041 TGGGGGTGGC CAGAGCCCGG CACAGGAAGA ACGTCGACCG AGTTTCAATC AGAAGCTACA 2101 GGACAGACAT TAGCATGTCA GACTTCGAGA ACTCCAGGGA ATTTGGAGCC AATGACAACA 2161 TGGGAGCCTC TTCGATCACT CAGGAGACAT CCCTCGGAGG AAAAGAAGAG TTTGTTGCCA 2221 CCACTGAGAG CACCACAGAG ACCAAAGAAC CCAAGAAGGC AAAAAGGTCA TCCAAGGAGG 2281 AAGCCGAGAT GGCCTACAAA GACTTCCTGC TCCAGTCCAG CACCGTGGCC GCCGAGGCCC 2341 AGGACGGCCC CCAGGAAGCC TTGCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 2401 attgcttatc aatttgttgc aacgaac