Construct: ORF ccsbBroadEn_01212

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008991.1_s300c1, BRDN0000394440
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PKP2 (5318)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5318 PKP2 plakophilin 2 NM_001005242.2 100% 100%
2 human 5318 PKP2 plakophilin 2 NM_004572.3 95% 95% 1378_1509del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2580
ORF length:
2511
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCAGCCCCC GGCGCCCCAG CTGAGTACGG CTACATCCGG ACCGTCCTGG
121GCCAGCAGAT CCTGGGACAA CTGGACAGCT CCAGCCTGGC GCTGCCCTCC GAGGCCAAGC
181TGAAGCTGGC GGGGAGCAGC GGCCGCGGCG GCCAGACAGT CAAGAGCCTG CGGATCCAGG
241AGCAGGTGCA GCAGACCCTC GCCCGGAAGG GCCGCAGCTC CGTGGGCAAC GGAAATCTTC
301ACCGAACCAG CAGTGTTCCT GAGTATGTCT ACAACCTACA CTTGGTTGAA AATGATTTTG
361TTGGAGGCCG TTCCCCTGTT CCTAAAACCT ATGACATGCT AAAGGCTGGC ACAACTGCCA
421CTTATGAAGG TCGCTGGGGA AGAGGAACAG CACAGTACAG CTCCCAGAAG TCCGTGGAAG
481AAAGGTCCTT GAGGCATCCT CTGAGGAGAC TGGAGATTTC TCCTGACAGC AGCCCGGAGA
541GGGCTCACTA CACGCACAGC GATTACCAGT ACAGCCAGAG AAGCCAGGCT GGGCACACCC
601TGCACCACCA AGAAAGCAGG CGGGCCGCCC TCCTAGTGCC ACCGAGATAT GCTCGTTCCG
661AGATCGTGGG GGTCAGCCGT GCTGGCACCA CAAGCAGGCA GCGCCACTTT GACACATACC
721ACAGACAGTA CCAGCATGGC TCTGTTAGCG ACACCGTTTT TGACAGCATC CCTGCCAACC
781CGGCCCTGCT CACGTACCCC AGGCCAGGGA CCAGCCGCAG CATGGGCAAC CTCTTGGAGA
841AGGAGAACTA CCTGACGGCA GGGCTCACTG TCGGGCAGGT CAGGCCGCTG GTGCCCCTGC
901AGCCCGTCAC TCAGAACAGG GCTTCCAGGT CCTCCTGGCA TCAGAGCTCC TTCCACAGCA
961CCCGCACGCT GAGGGAAGCT GGGCCCAGTG TCGCCGTGGA TTCCAGCGGG AGGAGAGCGC
1021ACTTGACTGT CGGCCAGGCG GCCGCAGGGG GAAGTGGGAA TCTGCTCACT GAGAGAAGCA
1081CTTTCACTGA CTCCCAGCTG GGGAATGCAG ACATGGAGAT GACTCTGGAG CGAGCAGTGA
1141GTATGCTCGA GGCAGACCAC ATGCTGCCAT CCAGGATTTC TGCTGCAGCT ACTTTCATAC
1201AGCACGAGTG CTTCCAGAAA TCTGAAGCTC GGAAGAGGGT TAACCAGCTT CGTGGCATCC
1261TCAAGCTTCT GCAGCTCCTA AAAGTTCAGA ATGAAGACGT TCAGCGAGCT GTGTGTGGGG
1321CCTTGAGAAA CTTAGTATTT GAAGACAATG ACAACAAATT GGAGGTGGCT GAACTAAATG
1381GGGTACCTCG GCTGCTCCAG GTGCTGAAGC AAACCAGAGA CTTGGAGACT AAAAAACAAA
1441TAACAGGTTT GCTGTGGAAT TTGTCATCTA ATGACAAACT CAAGAATCTC ATGATAACAG
1501AAGCATTGCT TACGCTGACG GAGAATATCA TCATCCCCTT TTCTGGGTGG CCTGAAGGAG
1561ACTACCCAAA AGCAAATGGT TTGCTCGATT TTGACATATT CTACAACGTC ACTGGATGCC
1621TAAGAAACAT GAGTTCTGCT GGCGCTGATG GGAGAAAAGC GATGAGAAGA TGTGACGGAC
1681TCATTGACTC ACTGGTCCAT TATGTCAGAG GAACCATTGC AGATTACCAG CCAGATGACA
1741AGGCCACGGA GAATTGTGTG TGCATTCTTC ATAACCTCTC CTACCAGCTG GAGGCAGAGC
1801TCCCAGAGAA ATATTCCCAG AATATCTATA TTCAAAACCG GAATATCCAG ACTGACAACA
1861ACAAAAGTAT TGGATGTTTT GGCAGTCGAA GCAGGAAAGT AAAAGAGCAA TACCAGGACG
1921TGCCGATGCC GGAGGAAAAG AGCAACCCCA AGGGCGTGGA GTGGCTGTGG CATTCCATTG
1981TTATAAGGAT GTATCTGTCC TTGATCGCCA AAAGTGTCCG CAACTACACA CAAGAAGCAT
2041CCTTAGGAGC TCTGCAGAAC CTCACGGCCG GAAGTGGACC AATGCCGACA TCAGTGGCTC
2101AGACAGTTGT CCAGAAGGAA AGTGGCCTGC AGCACACCCG AAAGATGCTG CATGTTGGTG
2161ACCCAAGTGT GAAAAAGACA GCCATCTCGC TGCTGAGGAA TCTGTCCCGG AATCTTTCTC
2221TGCAGAATGA AATTGCCAAA GAAACTCTCC CTGATTTGGT TTCCATCATT CCTGACACAG
2281TCCCGAGTAC TGACCTTCTC ATTGAAACTA CAGCCTCTGC CTGTTACACA TTGAACAACA
2341TAATCCAAAA CAGTTACCAG AATGCACGCG ACCTTCTAAA CACCGGGGGC ATCCAGAAAA
2401TTATGGCCAT TAGTGCAGGC GATGCCTATG CCTCCAACAA AGCAAGTAAA GCTGCTTCCG
2461TCCTTCTGTA TTCTCTGTGG GCACACACGG AACTGCATCA TGCCTACAAG AAGGCTCAGT
2521TTAAGAAGAC AGATTTTGTC AACAGCCGGA CTGCCAAAGC CTACCACTCC CTTAAAGACT
2581TGCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
2641acgaac

Download FASTA (ORF) (Full)