Construct: ORF ccsbBroadEn_01495
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013348.1_s300c1, BRDN0000384967
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCL2 (6347)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6347 | CCL2 | C-C motif chemokine ligand 2 | NM_002982.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 363
- ORF length:
- 297
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA AGTCTCTGCC GCCCTTCTGT GCCTGCTGCT CATAGCAGCC ACCTTCATTC 121 CCCAAGGGCT CGCTCAGCCA GATGCAATCA ATGCCCCAGT CACCTGCTGT TATAACTTCA 181 CCAATAGGAA GATCTCAGTG CAGAGGCTCG CGAGCTATAG AAGAATCACC AGCAGCAAGT 241 GTCCCAAAGA AGCTGTGATC TTCAAGACCA TTGTGGCCAA GGAGATCTGT GCTGACCCCA 301 AGCAGAAGTG GGTTCAGGAT TCCATGGACC ACCTGGACAA GCAAACCCAA ACTCCGAAGA 361 CTTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 421 gcaacgaac