Construct: ORF ccsbBroadEn_01959

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009365.1_s300c1, BRDN0000392395
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDXK (8566)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8566 PDXK pyridoxal kinase NM_003681.5 100% 100%
2 human 8566 PDXK pyridoxal kinase XM_005261196.3 90.8% 86.4% (many diffs)
3 human 8566 PDXK pyridoxal kinase NM_001331030.2 86.9% 85.2% (many diffs)
4 human 8566 PDXK pyridoxal kinase XM_011529758.3 81.7% 73.7% (many diffs)
5 human 8566 PDXK pyridoxal kinase XM_005261199.2 76.6% 76.6% 0_1ins219
6 human 8566 PDXK pyridoxal kinase XM_011529760.2 76.6% 76.6% 0_1ins219
7 human 8566 PDXK pyridoxal kinase XM_011529761.1 76.6% 76.6% 0_1ins219
8 human 8566 PDXK pyridoxal kinase XM_017028483.2 76.6% 76.6% 0_1ins219
9 human 8566 PDXK pyridoxal kinase XM_017028484.1 76.6% 76.6% 0_1ins219
10 human 8566 PDXK pyridoxal kinase XM_005261195.2 74.8% 70.7% (many diffs)
11 mouse 216134 Pdxk pyridoxal (pyridoxine, vita... NM_172134.2 84.8% 86.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1002
ORF length:
936
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GGAGGAGTGC CGGGTGCTCT CCATACAGAG CCACGTCATC CGCGGCTACG
121TGGGCAACCG GGCGGCCACG TTCCCGCTGC AGGTTTTGGG ATTTGAGATT GACGCGGTGA
181ACTCTGTCCA GTTTTCAAAC CACACAGGCT ATGCCCACTG GAAGGGCCAA GTGCTGAATT
241CAGATGAGCT CCAGGAGTTG TACGAAGGCC TGAGGCTGAA CAACATGAAT AAATATGACT
301ACGTGCTCAC AGGTTATACG AGGGACAAGT CGTTCCTGGC CATGGTGGTG GACATTGTGC
361AGGAGCTGAA GCAGCAGAAC CCCAGGCTGG TGTACGTGTG TGATCCAGTC TTGGGTGACA
421AGTGGGACGG CGAAGGCTCG ATGTACGTCC CGGAGGACCT CCTTCCCGTC TACAAAGAAA
481AAGTGGTGCC GCTTGCAGAC ATTATCACGC CCAACCAGTT TGAGGCCGAG TTACTGAGTG
541GCCGGAAGAT CCACAGCCAG GAGGAAGCCT TGCGGGTGAT GGACATGCTG CACTCTATGG
601GCCCCGACAC CGTGGTCATC ACCAGCTCCG ACCTGCCCTC CCCGCAGGGC AGCAACTACC
661TGATTGTGCT GGGGAGTCAG AGGAGGAGGA ATCCCGCTGG CTCCGTGGTG ATGGAACGCA
721TCCGGATGGA CATTCGCAAA GTGGACGCCG TCTTTGTGGG CACTGGGGAC CTGTTTGCTG
781CCATGCTCCT GGCGTGGACA CACAAGCACC CCAATAACCT CAAGGTGGCC TGTGAGAAGA
841CCGTGTCTAC CTTGCACCAC GTTCTGCAGA GGACCATCCA GTGTGCAAAA GCCCAGGCCG
901GGGAAGGAGT GAGGCCCAGC CCCATGCAGC TGGAGCTGCG GATGGTGCAG AGCAAAAGGG
961ACATCGAGGA CCCAGAGATC GTCGTCCAGG CCACGGTGCT GTGCCCAACT TTCTTGTACA
1021AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)