Construct: ORF ccsbBroadEn_02117

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007665.1_s300c1, BRDN0000386949
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PNMA1 (9240)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9240 PNMA1 PNMA family member 1 NM_006029.5 100% 100%
2 mouse 70481 Pnma1 paraneoplastic antigen MA1 NM_027438.3 87.3% 92% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1125
ORF length:
1059
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GATGACACTG TTGGAAGACT GGTGCCGGGG GATGGATGTG AACTCCCAGA
121GAGCTCTGTT AGTCTGGGGC ATCCCAGTGA ACTGTGATGA GGCTGAAATC GAAGAGACCC
181TCCAGGCTGC GATGCCCCAG GTCTCCTACC GAATGCTTGG GAGAATGTTC TGGAGGGAAG
241AAAATGCGAA AGCAGCCTTA TTAGAGCTCA CTGGCGCTGT AGATTACGCC GCGATCCCCA
301GGGAGATGCC GGGCAAAGGA GGGGTCTGGA AAGTGTTATT TAAGCCCCCA ACTTCTGATG
361CTGAATTTTT AGAAAGATTG CACCTCTTCC TAGCTAGAGA GGGGTGGACC GTGCAAGATG
421TTGCCCGTGT CCTTGGGTTT CAGAACCCTA CTCCGACCCC GGGCCCAGAG ATGCCAGCAG
481AGATGCTAAA CTATATTTTG GATAATGTTA TTCAGCCTCT TGTTGAGTCC ATATGGTACA
541AGAGGCTGAC ACTTTTCTCG GGGAGGGACA TCCCAGGGCC TGGAGAGGAA ACCTTTGATC
601CCTGGCTGGA GCACACTAAT GAGGTCCTAG AGGAGTGGCA GGTGTCCGAT GTAGAAAAGA
661GGCGGCGGTT GATGGAGAGT CTTAGAGGCC CCGCCGCTGA TGTTATTCGC ATCCTTAAGT
721CCAACAACCC CGCGATAACC ACTGCCGAAT GCCTGAAGGC GCTTGAGCAG GTGTTTGGGA
781GCGTTGAGAG CTCTAGGGAT GCCCAGATCA AATTTCTGAA CACTTATCAG AACCCGGGAG
841AAAAATTGTC TGCTTATGTC ATTCGTCTGG AGCCTCTGCT ACAGAAGGTG GTAGAGAAGG
901GGGCCATTGA TAAAGATAAT GTGAACCAGG CCCGCCTAGA GCAGGTCATT GCCGGGGCCA
961ACCACAGCGG GGCCATCCGA AGGCAGCTGT GGCTTACCGG GGCTGGGGAA GGGCCAGCCC
1021CAAACCTCTT TCAGTTGCTG GTGCAGATCC GTGAGGAGGA AGCCAAGGAG GAGGAGGAGG
1081AGGCTGAGGC CACCCTTCTG CAGTTAGGCC TGGAAGGGCA CTTCTGCCCA ACTTTCTTGT
1141ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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