Construct: ORF ccsbBroadEn_02290
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002448.1_s300c1, BRDN0000395476
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PDCD6IP (10015)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10015 | PDCD6IP | programmed cell death 6 int... | NM_013374.6 | 100% | 100% | |
| 2 | human | 10015 | PDCD6IP | programmed cell death 6 int... | NM_001162429.2 | 99.4% | 99.4% | 716_730del |
| 3 | human | 10015 | PDCD6IP | programmed cell death 6 int... | XM_017005488.1 | 78.1% | 78.1% | 0_1ins570 |
| 4 | human | 10015 | PDCD6IP | programmed cell death 6 int... | XM_011533252.1 | 77.6% | 77.6% | 0_1ins570;146_160del |
| 5 | human | 10015 | PDCD6IP | programmed cell death 6 int... | XM_011533253.1 | 77.6% | 77.6% | 0_1ins570;146_160del |
| 6 | human | 646278 | PDCD6IPP2 | PDCD6IP pseudogene 2 | NR_037599.1 | 49.6% | (many diffs) | |
| 7 | human | 10015 | PDCD6IP | programmed cell death 6 int... | NM_001256192.1 | 29.7% | 28% | (many diffs) |
| 8 | mouse | 18571 | Pdcd6ip | programmed cell death 6 int... | NM_011052.2 | 88.1% | 94.4% | (many diffs) |
| 9 | mouse | 18571 | Pdcd6ip | programmed cell death 6 int... | NM_001164678.1 | 87.8% | 94.1% | (many diffs) |
| 10 | mouse | 18571 | Pdcd6ip | programmed cell death 6 int... | NM_001164677.1 | 87.6% | 93.9% | (many diffs) |
| 11 | mouse | 18571 | Pdcd6ip | programmed cell death 6 int... | XM_011242941.2 | 87.3% | 93.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2670
- ORF length:
- 2604
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GACATTCATC TCGGTGCAGC TGAAAAAGAC CTCAGAGGTG GACCTGGCCA 121 AGCCGCTGGT GAAGTTCATC CAGCAGACTT ACCCAAGCGG CGGGGAAGAG CAGGCCCAGT 181 ACTGCCGCGC GGCGGAGGAG CTCAGCAAGC TGCGCCGCGC CGCAGTCGGT CGTCCGCTGG 241 ACAAGCACGA GGGCGCGCTC GAGACGCTCC TGAGATATTA TGATCAGATT TGTTCTATTG 301 AACCCAAATT CCCATTTTCT GAAAATCAGA TCTGCTTGAC ATTTACCTGG AAGGATGCTT 361 TCGATAAAGG TTCACTTTTT GGAGGCTCTG TAAAACTGGC TCTTGCAAGC TTAGGATATG 421 AAAAGAGCTG TGTGTTGTTC AATTGTGCAG CCTTAGCTAG CCAAATTGCA GCAGAACAGA 481 ACCTGGATAA TGATGAAGGA TTGAAAATCG CTGCTAAACA TTACCAGTTT GCTAGTGGTG 541 CCTTTTTACA TATTAAAGAG ACGGTTTTAT CTGCCTTAAG TCGAGAGCCG ACCGTGGACA 601 TATCTCCAGA TACTGTTGGG ACCCTCAGTC TTATTATGCT GGCACAGGCT CAAGAAGTAT 661 TTTTTTTAAA AGCCACAAGA GATAAAATGA AAGATGCCAT CATAGCTAAA TTGGCTAATC 721 AGGCTGCAGA TTATTTTGGT GATGCTTTCA AACAGTGTCA ATACAAAGAT ACTCTCCCCA 781 AGGAGGTGTT CCCTGTCTTG GCTGCAAAGC ACTGTATCAT GCAGGCCAAT GCTGAGTACC 841 ATCAGTCTAT CCTGGCAAAA CAGCAGAAGA AATTTGGAGA AGAAATTGCA AGGTTACAGC 901 ATGCAGCAGA ACTGATTAAA ACAGTGGCAT CTCGCTATGA TGAATATGTT AATGTGAAGG 961 ATTTTTCTGA CAAAATCAAT CGTGCCCTTG CTGCAGCAAA GAAGGATAAT GACTTCATTT 1021 ATCATGATCG AGTTCCAGAC CTTAAAGATC TAGATCCTAT TGGCAAAGCC ACACTTGTGA 1081 AATCTACCCC GGTCAATGTA CCCATCAGTC AGAAATTTAC TGATCTGTTT GAGAAGATGG 1141 TTCCCGTGTC AGTACAGCAG TCTTTGGCTG CCTATAATCA GAGGAAAGCC GATTTGGTTA 1201 ACAGATCAAT TGCTCAGATG AGAGAAGCCA CCACTTTGGC AAATGGGGTG CTAGCTTCCC 1261 TTAATCTTCC AGCAGCAATT GAAGATGTGT CTGGAGACAC TGTACCTCAG TCTATATTGA 1321 CTAAATCCAG ATCTGTGATT GAACAGGGAG GCATCCAGAC TGTTGATCAG TTGATTAAAG 1381 AACTGCCTGA ATTACTGCAA CGAAATAGAG AAATCCTAGA TGAGTCATTA AGGTTGTTGG 1441 ATGAAGAAGA AGCAACCGAT AATGATTTAA GAGCAAAATT TAAGGAACGT TGGCAAAGGA 1501 CACCATCCAA TGAACTGTAT AAGCCTTTAA GAGCAGAGGG AACCAACTTC AGAACAGTTT 1561 TAGATAAAGC TGTGCAGGCA GATGGACAAG TGAAAGAATG TTACCAGTCT CATCGTGACA 1621 CCATCGTGCT TTTGTGTAAG CCAGAGCCTG AGCTGAATGC TGCCATCCCT TCTGCTAATC 1681 CAGCAAAGAC CATGCAGGGC AGTGAGGTTG TAAATGTCTT AAAATCCTTA TTGTCAAATC 1741 TTGATGAAGT AAAGAAGGAA AGAGAGGGTC TGGAGAATGA CTTGAAATCT GTGAATTTTG 1801 ACATGACAAG CAAGTTTTTG ACAGCCCTGG CTCAAGATGG TGTGATAAAT GAAGAAGCTC 1861 TTTCTGTTAC TGAACTAGAT CGAGTCTATG GAGGTCTTAC AACTAAAGTC CAAGAATCTC 1921 TAAAGAAACA GGAGGGACTT CTTAAAAATA TTCAGGTCTC ACATCAGGAA TTTTCAAAAA 1981 TGAAACAATC TAATAATGAA GCTAACTTAA GAGAAGAAGT TTTGAAGAAT TTAGCTACTG 2041 CATATGACAA CTTTGTTGAA CTTGTAGCTA ATTTGAAGGA AGGCACAAAG TTTTACAATG 2101 AGTTGACTGA AATCCTGGTC AGGTTCCAGA ACAAATGCAG TGATATAGTT TTTGCACGGA 2161 AGACAGAAAG AGATGAACTC TTAAAGGACT TGCAACAAAG CATTGCCAGA GAACCTAGTG 2221 CTCCTTCAAT TCCTACACCT GCGTATCAGT CCTCACCAGC AGGAGGACAT GCACCAACTC 2281 CTCCAACTCC AGCGCCAAGA ACCATGCCGC CTACTAAGCC CCAGCCCCCA GCCAGGCCTC 2341 CACCACCTGT GCTTCCAGCA AATCGAGCTC CTTCTGCTAC TGCTCCATCT CCAGTGGGGG 2401 CTGGGACTGC TGCGCCAGCT CCATCACAAA CGCCTGGCTC AGCTCCTCCT CCACAGGCGC 2461 AGGGACCACC CTATCCCACC TATCCAGGAT ATCCTGGGTA TTGCCAAATG CCCATGCCCA 2521 TGGGCTATAA TCCTTATGCG TATGGCCAGT ATAATATGCC ATATCCACCA GTGTATCACC 2581 AGAGTCCTGG ACAGGCTCCA TACCCGGGAC CCCAGCAGCC TTCATACCCC TTCCCTCAGC 2641 CCCCACAGCA GTCTTACTAT CCACAGCAGT ACCCAACTTT CTTGTACAAA GTtggcatta 2701 taagaaagca ttgcttatca atttgttgca acgaac