Construct: ORF ccsbBroadEn_02479
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006023.1_s300c1, BRDN0000395621
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SCGN (10590)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10590 | SCGN | secretagogin, EF-hand calci... | NM_006998.4 | 100% | 100% | |
| 2 | human | 10590 | SCGN | secretagogin, EF-hand calci... | XM_017010181.1 | 80.4% | 80.4% | 0_1ins162 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 894
- ORF length:
- 828
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CAGCTCCCGG GAACCGACTC TGGGGCGCTT GGACGCCGCT GGCTTCTGGC 121 AGGTCTGGCA GCGCTTTGAT GCGGATGAAA AAGGTTACAT AGAAGAGAAG GAACTCGATG 181 CTTTCTTTCT CCACATGTTG ATGAAACTGG GTACTGATGA CACGGTCATG AAAGCAAATT 241 TGCACAAGGT GAAACAGCAG TTTATGACTA CCCAAGATGC CTCTAAAGAT GGTCGCATTC 301 GGATGAAAGA GCTTGCTGGT ATGTTCTTAT CTGAGGATGA AAACTTTCTT CTGCTCTTTC 361 GCCGGGAAAA CCCACTGGAC AGCAGCGTGG AGTTTATGCA GATTTGGCGC AAATATGACG 421 CTGACAGCAG TGGCTTTATA TCAGCTGCTG AGCTCCGCAA CTTCCTCCGA GACCTCTTTC 481 TTCACCACAA AAAGGCCATT TCTGAGGCTA AACTGGAAGA ATACACTGGC ACCATGATGA 541 AGATTTTTGA CAGAAATAAA GATGGTCGGT TGGATCTAAA TGACTTAGCA AGGATTCTGG 601 CTCTTCAGGA AAACTTCCTT CTCCAATTTA AAATGGATGC TTGTTCTACT GAAGAAAGGA 661 AAAGGGACTT TGAGAAAATC TTTGCCTACT ATGATGTTAG TAAAACAGGA GCCCTGGAAG 721 GCCCAGAAGT GGATGGGTTT GTCAAAGACA TGATGGAGCT TGTCCAGCCC AGCATCAGCG 781 GGGTGGACCT TGATAAGTTC CGCGAGATTC TCCTGCGTCA CTGCGACGTG AACAAGGATG 841 GAAAAATTCA GAAGTCTGAG CTGGCTTTGT GTCTTGGGCT GAAAATCAAC CCATACCCAA 901 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac