Construct: ORF ccsbBroadEn_02520
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003483.1_s300c1, BRDN0000390144
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PLAC1 (10761)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10761 | PLAC1 | placenta enriched 1 | NM_001316887.1 | 100% | 100% | |
| 2 | human | 10761 | PLAC1 | placenta enriched 1 | NM_001316888.1 | 100% | 100% | |
| 3 | human | 10761 | PLAC1 | placenta enriched 1 | NM_001316889.1 | 100% | 100% | |
| 4 | human | 10761 | PLAC1 | placenta enriched 1 | NM_021796.4 | 100% | 100% | |
| 5 | human | 10761 | PLAC1 | placenta enriched 1 | XM_011531257.2 | 100% | 100% | |
| 6 | human | 10761 | PLAC1 | placenta enriched 1 | XM_011531260.2 | 100% | 100% | |
| 7 | human | 10761 | PLAC1 | placenta enriched 1 | XM_017029236.1 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 702
- ORF length:
- 636
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA AGTTTTTAAG TTCATAGGAC TGATGATCCT CCTCACCTCT GCGTTTTCAG 121 CCGGTTCAGG ACAAAGTCCA ATGACTGTGC TGTGCTCCAT AGACTGGTTC ATGGTCACAG 181 TGCACCCCTT CATGCTAAAC AACGATGTGT GTGTACACTT TCATGAACTA CACTTGGGCC 241 TGGGTTGCCC CCCAAACCAT GTTCAGCCAC ACGCCTACCA GTTCACCTAC CGTGTTACTG 301 AATGTGGCAT CAGGGCCAAA GCTGTCTCTC AGGACATGGT TATCTACAGC ACTGAGATAC 361 ACTACTCTTC TAAGGGCACG CCATCTAAGT TTGTGATCCC AGTGTCATGT GCTGCCCCCC 421 AAAAGTCCCC ATGGCTCACC AAGCCCTGCT CCATGAGAGT AGCCAGCAAG AGCAGGGCCA 481 CAGCCCAGAA GGATGAGAAA TGCTACGAGG TGTTCAGCTT GTCACAGTCC AGTCAAAGGC 541 CCAACTGCGA TTGTCCACCT TGTGTCTTCA GTGAAGAAGA GCATACCCAG GTCCCTTGTC 601 ACCAAGCAGG GGCTCAGGAG GCTCAACCTC TGCAGCCATC TCACTTTCTT GATATTTCTG 661 AGGATTGGTC TCTTCACACA GATGATATGA TTGGGTCCAT GTGCCCAACT TTCTTGTACA 721 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac