Construct: ORF ccsbBroadEn_02762
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005635.1_s300c1, BRDN0000455474
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COMMD3 (23412)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23412 | COMMD3 | COMM domain containing 3 | NM_012071.4 | 100% | 100% | |
| 2 | human | 100532731 | COMMD3-BMI1 | COMMD3-BMI1 readthrough | NM_001204062.1 | 28.9% | 30.1% | (many diffs) |
| 3 | mouse | 12238 | Commd3 | COMM domain containing 3 | NM_147778.3 | 91.9% | 89.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 654
- ORF length:
- 585
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGCTCTCG GAGTCTGTGC AGAAAGGCTT CCAGATGCTG GCGGATCCCC 121 GCTCCTTCGA CTCCAACGCC TTCACGCTTC TCCTCCGGGC GGCATTCCAG AGTCTGCTGG 181 ACGCCCAGGC GGACGAGGCC GTGTTAGATC ATCCAGACTT GAAACATATC GACCCAGTGG 241 TTTTAAAACA TTGTCATGCA GCAGCTGCAA CTTACATACT AGAGGCAGGA AAGCACCGAG 301 CTGACAAGTC AACTCTAAGC ACTTATCTAG AAGACTGTAA ATTTGACAGA GAGCGAATAG 361 AACTGTTTTG CACGGAATAT CAGAATAATA AGAATTCCCT AGAAATCCTA CTGGGAAGTA 421 TAGGCAGATC TCTCCCTCAT ATAACGGATG TTTCTTGGCG CTTGGAATAT CAGATAAAGA 481 CCAATCAACT TCATAGGATG TACAGACCTG CATATTTGGT GACCTTAAGT GTACAGAACA 541 CTGATTCCCC ATCCTATCCA GAGATTAGTT TTAGTTGCAG CATGGAACAA TTACAGGACT 601 TGGTGGGGAA ACTTAAAGAT GCTTCGAAAA GCCTGGAAAG AGCAACTCAG TTGTTGCCAA 661 CTTTCTTGTA CAAAGTTGGc attataagaa agcattgctt atcaatttgt tgcaacgaac