Construct: ORF ccsbBroadEn_02784

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011914.1_s300c1, BRDN0000457117
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SUZ12 (23512)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23512 SUZ12 SUZ12 polycomb repressive c... NM_015355.4 100% 100%
2 human 23512 SUZ12 SUZ12 polycomb repressive c... NM_001321207.2 96.8% 96.8% 384_385ins69
3 human 23512 SUZ12 SUZ12 polycomb repressive c... XM_006721794.3 81.5% 81.5% 0_1ins408
4 human 23512 SUZ12 SUZ12 polycomb repressive c... XM_017024409.1 59.6% 59.6% 0_1ins894
5 human 23512 SUZ12 SUZ12 polycomb repressive c... XR_001752462.1 47.2% 1_208del;1123_1124ins106;2320_4359del
6 human 440423 SUZ12P1 SUZ12 pseudogene 1 NR_144393.1 33.5% (many diffs)
7 mouse 52615 Suz12 suppressor of zeste 12 homo... NM_199196.2 92.8% 96.8% (many diffs)
8 mouse 52615 Suz12 suppressor of zeste 12 homo... NM_001163018.1 89.7% 93.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2283
ORF length:
2217
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GCCTCAGAAG CACGGCGGTG GGGGAGGGGG CGGCTCGGGG CCCAGCGCGG
121GGTCCGGGGG AGGCGGCTTC GGGGGTTCGG CGGCGGTGGC GGCGGCGACG GCTTCGGGCG
181GCAAATCCGG CGGCGGGAGC TGTGGAGGGG GTGGCAGTTA CTCGGCCTCC TCCTCCTCCT
241CCGCGGCGGC AGCGGCGGGG GCTGCGGTGT TACCGGTGAA GAAGCCGAAA ATGGAGCACG
301TCCAGGCTGA CCACGAGCTT TTCCTCCAGG CCTTTGAGAA GCCAACACAG ATCTATAGAT
361TTCTTCGAAC TCGGAATCTC ATAGCACCAA TATTTTTGCA CAGAACTCTT ACTTACATGT
421CTCATCGAAA CTCCAGAACA AACATCAAAA GGAAAACATT TAAAGTTGAT GATATGTTAT
481CAAAAGTAGA GAAAATGAAA GGAGAGCAAG AATCTCATAG CTTGTCAGCT CATTTGCAGC
541TTACGTTTAC TGGTTTCTTC CACAAAAATG ATAAGCCATC ACCAAACTCA GAAAATGAAC
601AAAATTCTGT TACCCTGGAA GTCCTGCTTG TGAAAGTTTG CCACAAAAAA AGAAAGGATG
661TAAGTTGTCC AATAAGGCAA GTTCCCACAG GTAAAAAGCA GGTGCCTTTG AATCCTGACC
721TCAATCAAAC AAAACCCGGA AATTTCCCGT CCCTTGCAGT TTCCAGTAAT GAATTTGAAC
781CTAGTAACAG CCATATGGTG AAGTCTTACT CGTTGCTATT TAGAGTGACT CGTCCAGGAA
841GAAGAGAGTT TAATGGAATG ATTAATGGAG AAACCAATGA AAATATTGAT GTCAATGAAG
901AGCTTCCAGC CAGAAGAAAA CGAAATCGTG AGGATGGGGA AAAGACATTT GTTGCACAAA
961TGACAGTATT TGATAAAAAC AGGCGCTTAC AGCTTTTAGA TGGGGAATAT GAAGTAGCCA
1021TGCAGGAAAT GGAAGAATGT CCAATAAGCA AGAAAAGAGC AACATGGGAG ACTATTCTTG
1081ATGGGAAGAG GCTGCCTCCA TTCGAAACAT TTTCTCAGGG ACCTACGTTG CAGTTCACTC
1141TTCGTTGGAC AGGAGAGACC AATGATAAAT CTACGGCTCC TATTGCCAAA CCTCTTGCCA
1201CTAGAAATTC AGAGAGTCTC CATCAGGAAA ACAAGCCTGG TTCAGTTAAA CCTACTCAAA
1261CTATTGCTGT TAAAGAATCA TTGACTACAG ATCTACAAAC AAGAAAAGAA AAGGATACTC
1321CAAATGAAAA CCGACAAAAA TTAAGAATAT TTTATCAGTT TCTCTATAAC AACAATACAA
1381GGCAACAAAC TGAAGCAAGA GATGACCTGC ATTGCCCTTG GTGTACTCTG AACTGCCGCA
1441AACTTTATAG TTTACTCAAG CATCTTAAAC TCTGCCATAG CAGATTTATC TTCAACTATG
1501TTTATCATCC AAAAGGTGCT AGGATAGATG TTTCTATCAA TGAGTGTTAT GATGGCTCCT
1561ATGCAGGAAA TCCTCAGGAT ATTCATCGCC AACCTGGATT TGCTTTTAGT CGCAACGGAC
1621CAGTTAAGAG AACACCTATC ACACATATTC TTGTGTGCAG GCCAAAACGA ACAAAAGCAA
1681GCATGTCTGA ATTTCTTGAA TCTGAAGATG GGGAAGTAGA ACAGCAAAGA ACATATAGTA
1741GTGGCCACAA TCGTCTGTAT TTCCATAGTG ATACCTGCTT ACCTCTCCGT CCACAAGAAA
1801TGGAAGTAGA TAGTGAAGAT GAAAAGGATC CTGAATGGCT AAGAGAAAAA ACCATTACAC
1861AAATTGAAGA GTTTTCTGAT GTTAATGAAG GAGAGAAAGA AGTGATGAAA CTCTGGAATC
1921TCCATGTCAT GAAGCATGGG TTTATTGCTG ACAATCAAAT GAATCATGCC TGTATGCTGT
1981TTGTAGAAAA TTATGGACAG AAAATAATTA AGAAGAATTT ATGTCGAAAC TTCATGCTTC
2041ATCTAGTCAG CATGCATGAC TTTAATCTTA TTAGCATAAT GTCAATAGAT AAAGCTGTTA
2101CCAAGCTCCG TGAAATGCAG CAAAAATTAG AAAAGGGGGA ATCTGCTTCC CCTGCAAACG
2161AAGAAATAAC TGAAGAACAA AATGGGACAG CAAATGGATT TAGTGAAATT AACTCAAAAG
2221AGAAAGCTTT GGAAACAGAT AGTGTCTCAG GGGTTTCAAA ACAGAGCAAA AAACAAAAAC
2281TCTGCCCAAC TTTCTTGTAC AAAGTTGGca ttataagaaa gcattgctta tcaatttgtt
2341gcaacgaac

Download FASTA (ORF) (Full)

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