Construct: ORF ccsbBroadEn_03045
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017253.1_s300c1, BRDN0000396903
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COA3 (28958)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 28958 | COA3 | cytochrome c oxidase assemb... | NM_001040431.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 384
- ORF length:
- 318
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GTCTTCGGGA GCTGGTGACC CTCTGGATTC TAAGCGTGGA GAGGCCCCGT 121 TCGCTCAGCG TATCGACCCG ACTCGGGAGA AGCTGACACC CGAGCAACTG CATTCCATGC 181 GGCAGGCGGA GCTTGCCCAG TGGCAGAAGG TCCTACCACG GCGGCGAACC CGGAACATCG 241 TGACCGGCCT AGGCATCGGG GCCCTGGTGT TGGCTATTTA TGGTTACACC TTCTACTCGA 301 TTTCCCAGGA GCGTTTCCTA GATGAGCTAG AAGACGAGGC CAAAGCTGCC CGAGCCCGAG 361 CTCTGGCAAG GGCGTCAGGG TCCTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 421 agcattgctt atcaatttgt tgcaacgaac