Construct: ORF ccsbBroadEn_03291
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006789.1_s300c1, BRDN0000391057
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- POMP (51371)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51371 | POMP | proteasome maturation protein | NM_015932.6 | 100% | 100% | |
| 2 | mouse | 66537 | Pomp | proteasome maturation protein | NM_025624.2 | 86% | 95% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 489
- ORF length:
- 423
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA TGCCAGAGGA CTTGGATCTG AGCTAAAGGA CAGTATTCCA GTTACTGAAC 121 TTTCAGCAAG TGGACCTTTT GAAAGTCATG ATCTTCTTCG GAAAGGTTTT TCTTGTGTGA 181 AAAATGAACT TTTGCCTAGT CATCCCCTTG AATTATCAGA AAAAAATTTC CAGCTCAACC 241 AAGATAAAAT GAATTTTTCC ACACTGAGAA ACATTCAGGG TCTATTTGCT CCGCTAAAAT 301 TACAGATGGA ATTCAAGGCA GTGCAGCAGG TTCAGCGTCT TCCATTTCTT TCAAGCTCAA 361 ATCTTTCACT GGATGTTTTG AGGGGTAATG ATGAGACTAT TGGATTTGAG GATATTCTTA 421 ATGATCCATC ACAAAGCGAA GTCATGGGAG AGCCACACTT GATGGTGGAA TATAAACTTG 481 GTTTACTGTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 541 tttgttgcaa cgaac