Construct: ORF ccsbBroadEn_03459
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002983.1_s300c1, BRDN0000397567
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KCTD9 (54793)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54793 | KCTD9 | potassium channel tetrameri... | NM_017634.4 | 100% | 100% | |
| 2 | human | 54793 | KCTD9 | potassium channel tetrameri... | XR_001745545.1 | 18.3% | 1_222del;1390_6360del | |
| 3 | mouse | 105440 | Kctd9 | potassium channel tetrameri... | NM_001111028.1 | 91.4% | 98.4% | (many diffs) |
| 4 | mouse | 105440 | Kctd9 | potassium channel tetrameri... | NM_134073.2 | 79.3% | 85.6% | (many diffs) |
| 5 | mouse | 105440 | Kctd9 | potassium channel tetrameri... | XR_383124.3 | 69.9% | (many diffs) | |
| 6 | mouse | 105440 | Kctd9 | potassium channel tetrameri... | NM_001285933.1 | 65.1% | 70.4% | (many diffs) |
| 7 | mouse | 105440 | Kctd9 | potassium channel tetrameri... | XM_006518342.2 | 65.1% | 70.4% | (many diffs) |
| 8 | mouse | 105440 | Kctd9 | potassium channel tetrameri... | XM_006518343.2 | 65.1% | 70.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1233
- ORF length:
- 1167
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG GCGGGTGACC CTGTTCCTGA ACGGCAGCCC CAAGAACGGA AAGGTGGTTG 121 CTGTATATGG AACTTTATCT GATTTGCTTT CTGTGGCCAG CAGTAAACTC GGCATAAAAG 181 CCACCAGTGT GTATAATGGG AAAGGTGGAC TGATTGATGA TATTGCTTTG ATCAGGGATG 241 ATGATGTTTT GTTTGTTTGT GAAGGAGAGC CATTTATTGA TCCTCAGACA GATTCTAAGC 301 CTCCTGAGGG ATTGTTAGGA TTCCACACAG ACTGGCTGAC ATTAAATGTT GGAGGGCGGT 361 ACTTTACAAC TACACGGAGC ACTTTAGTGA ATAAAGAACC TGACAGTATG CTGGCCCACA 421 TGTTTAAGGA CAAAGGTGTC TGGGGAAATA AGCAAGATCA TAGAGGAGCT TTCTTAATTG 481 ACCGAAGTCC TGAGTACTTC GAACCCATTT TGAACTACTT GCGTCATGGA CAGCTCATTG 541 TAAATGATGG CATTAATTTA TTGGGTGTGT TAGAAGAAGC AAGATTTTTT GGTATTGACT 601 CATTGATTGA ACACCTAGAA GTGGCAATAA AGAATTCTCA ACCACCGGAG GATCATTCAC 661 CAATATCCCG AAAGGAATTT GTCCGATTTT TGCTAGCAAC TCCAACCAAG TCAGAACTGC 721 GATGCCAGGG TTTGAACTTC AGTGGTGCTG ATCTTTCTCG TTTGGACCTT CGATACATTA 781 ACTTCAAAAT GGCCAATTTA AGCCGCTGTA ATCTTGCACA TGCAAATCTT TGCTGTGCAA 841 ATCTTGAACG AGCTGATCTC TCTGGATCAG TGCTTGACTG TGCGAATCTC CAGGGAGTCA 901 AGATGCTCTG TTCTAATGCA GAAGGAGCAT CCCTGAAACT GTGTAATTTT GAGGATCCTT 961 CTGGTCTTAA AGCCAATTTA GAAGGTGCTA ATCTGAAAGG TGTGGATATG GAAGGAAGTC 1021 AGATGACAGG AATTAACCTG AGAGTGGCTA CCTTAAAAAA TGCAAAGTTG AAGAACTGTA 1081 ACCTCAGAGG AGCAACTCTG GCAGGAACTG ATTTAGAGAA TTGTGATCTG TCTGGGTGTG 1141 ATCTTCAAGA AGCCAACCTG AGAGGGTCCA ACGTGAAGGG AGCTATATTT GAAGAGATGC 1201 TGACACCACT ACACATGTCA CAAAGTGTCA GATGCCCAAC TTTCTTGTAC AAAGTtggca 1261 ttataagaaa gcattgctta tcaatttgtt gcaacgaac