Construct: ORF ccsbBroadEn_03507
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001405.1_s300c1, BRDN0000395508
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LAMTOR1 (55004)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55004 | LAMTOR1 | late endosomal/lysosomal ad... | NM_017907.3 | 100% | 100% | |
| 2 | mouse | 66508 | Lamtor1 | late endosomal/lysosomal ad... | NM_025605.3 | 92.5% | 99.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 549
- ORF length:
- 483
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GTGCTGCTAC AGCAGCGAGA ACGAGGACTC GGACCAGGAC CGAGAGGAGC 121 GGAAGCTGCT GCTGGACCCT AGCAGCCCCC CTACCAAAGC TCTCAATGGA GCCGAGCCCA 181 ACTACCACAG CCTGCCTTCC GCTCGCACTG ATGAGCAGGC CCTGCTCTCT TCCATCCTTG 241 CCAAGACAGC CAGCAACATC ATTGATGTGT CTGCTGCAGA CTCACAGGGC ATGGAGCAGC 301 ATGAGTACAT GGACCGTGCC AGGCAGTACA GCACCCGCTT GGCTGTGCTG AGCAGCAGCC 361 TGACCCATTG GAAGAAGCTG CCACCGCTGC CGTCTCTTAC CAGCCAGCCC CACCAAGTGC 421 TGGCCAGTGA GCCCATCCCG TTCTCTGATT TGCAGCAGGT CTCCAGGATA GCTGCTTATG 481 CCTACAGTGC ACTTTCTCAG ATCCGTGTGG ACGCAAAAGA GGAGCTGGTT GTACAGTTTG 541 GGATCCCATG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 601 tttgttgcaa cgaac