Construct: ORF ccsbBroadEn_03522
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005724.1_s300c1, BRDN0000391496
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- EBLN2 (55096)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55096 | EBLN2 | endogenous Bornavirus like ... | NM_018029.4 | 99.8% | 100% | 741A>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 885
- ORF length:
- 816
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGTTATTTT CTTAAATTGT ATGCTTATGT TAATTCTCAC AGTCTTTTTG 121 TTTGGGTCTG TGACAGATCT TACAAAAGAT CTTTTAGACC TATGATTCTT AACAAAATTA 181 AAGAATTAAG TCGGAACCAA TTTTCCACAA TGTCTCATCT AAGAAAGGAC TCACAGCCCA 241 GCAGCCCAGG AGATGACGCA ATGGACAGGA GTGGGCTCCC TGACCTTCAA GGAAGATTTG 301 AGCTATCTGG GAAAAACAGA CAGTATCCAC TGGATGCATT GGAACCCCAA CCCAGCATTG 361 GGGATATTAA GGACATTAAA AAAGCAGCCA AGTCTATGCT AGACCCAGCA CATAAATCTC 421 ATTTCCACCC TGTGACCCCA AGTTTAGTAT TCTTGTGTTT CATATTTGAT GGGTTACACC 481 AGGCATTACT GAGTGTTGGT GTGAGCAAGA GGTCTAATAC TGTGGTTGGG AATGAGAACG 541 AGGAAAGGGG TACTCCTTAT GCTAGCAGAT TCAAAGATAT GCCTAACTTT ATTGCCCTTG 601 AGAAGTCATC AGTTCTCCGC CACTGCTGTG ACCTTTTGAT AGGCATTGCG GCTGGATCAA 661 GTGATAAGAT TTGCACCAGC AGTCTCCAAG TTCAGAGACG ATTCAAGGCA ATGATGGCAT 721 CTATTGGAAG ACTTTCACAT GGTGAGAGTG CTGATCTGCT AATCAGCTGC AATGCAGAAT 781 CAGCCATAGG TTGGATCAGC TCAAGACCGT GGGTTGGAGA ATTAATGTTC ACACTTCTAT 841 TTGGAGACTT TGAATCCCCT CTACACAAGC TACGCAAGTC AAGTTTGCCA ACTTTCTTGT 901 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c