Construct: ORF ccsbBroadEn_03560
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011543.1_s300c1, BRDN0000393736
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC47A1 (55244)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55244 | SLC47A1 | solute carrier family 47 me... | NM_018242.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1776
- ORF length:
- 1710
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AGCTCCTGAG GAGCCCGCGC CAGTGCGCGG AGGCCCGGAG GCCACCCTTG 121 AGGTCCGTGG GTCGCGCTGC TTGCGGCTGT CCGCCTTCCG AGAAGAGCTG CGGGCGCTCT 181 TGGTCCTGGC TGGCCCCGCG TTCTTGGTTC AGCTGATGGT GTTCCTGATC AGCTTCATAA 241 GCTCCGTGTT CTGTGGCCAC CTGGGCAAGC TGGAGCTGGA TGCAGTCACG CTGGCAATCG 301 CGGTTATCAA TGTCACTGGT GTCTCAGTGG GATTCGGCTT ATCTTCTGCC TGTGACACCC 361 TCATCTCCCA GACGTACGGG AGCCAGAACC TGAAGCACGT GGGCGTGATC CTGCAGCGGA 421 GTGCGCTCGT CCTGCTCCTC TGCTGCTTCC CCTGCTGGGC GCTCTTTCTC AACACCCAGC 481 ACATCCTGCT GCTCTTCAGG CAGGACCCAG ATGTGTCCAG GCTTACCCAG ACCTATGTCA 541 CGATCTTCAT TCCAGCTCTT CCTGCAACCT TTCTTTATAT GTTACAAGTT AAATATTTGC 601 TCAACCAGGG AATTGTACTG CCCCAGATCG TAACTGGAGT TGCAGCCAAC CTTGTCAATG 661 CCCTCGCCAA CTATCTGTTT CTCCATCAAC TGCATCTTGG GGTGATAGGC TCTGCACTGG 721 CAAACTTGAT TTCCCAGTAC ACCCTGGCTC TACTCCTCTT TCTCTACATC CTCGGGAAAA 781 AACTGCATCA AGCTACATGG GGAGGCTGGT CCCTCGAGTG CCTGCAGGAC TGGGCCTCCT 841 TCCTCCGCCT GGCCATCCCC AGCATGCTCA TGCTGTGCAT GGAGTGGTGG GCCTATGAGG 901 TCGGGAGCTT CCTCAGTGGC ATCCTCGGCA TGGTGGAGCT GGGCGCTCAG TCCATCGTGT 961 ATGAACTGGC CATCATTGTG TACATGGTCC CTGCAGGCTT CAGTGTGGCT GCCAGTGTCC 1021 GGGTAGGAAA CGCTCTGGGT GCTGGAGACA TGGAGCAGGC ACGGAAGTCC TCTACCGTTT 1081 CCCTGCTGAT TACAGTGCTC TTTGCTGTAG CCTTCAGTGT CCTGCTGTTA AGCTGTAAGG 1141 ATCACGTGGG GTACATTTTT ACTACCGACC GAGACATCAT TAATCTGGTG GCTCAGGTGG 1201 TTCCAATTTA TGCTGTTTCC CACCTCTTTG AAGCTCTTGC TTGCACGAGT GGTGGTGTTC 1261 TGAGGGGGAG TGGAAATCAG AAGGTTGGAG CCATTGTGAA TACCATTGGG TACTATGTGG 1321 TTGGCCTCCC CATCGGGATC GCGCTGATGT TTGCAACCAC ACTTGGAGTG ATGGGTCTGT 1381 GGTCAGGGAT CATCATCTGT ACAGTCTTTC AAGCTGTGTG TTTTCTAGGC TTTATTATTC 1441 AGCTAAATTG GAAAAAAGCC TGTCAGCAGG CTCAGGTACA CGCCAATTTG AAAGTAAACA 1501 ACGTGCCTCG GAGTGGGAAT TCTGCTCTCC CTCAGGATCC GCTTCACCCA GGGTGCCCTG 1561 AAAACCTTGA AGGAATTTTA ACGAACGATG TTGGAAAGAC AGGCGAGCCT CAGTCAGATC 1621 AGCAGATGCG CCAAGAAGAA CCTTTGCCGG AACATCCACA GGACGGCGCT AAATTGTCCA 1681 GGAAACAGCT GGTGCTGCGG CGAGGGCTTC TGCTCCTGGG GGTCTTCTTA ATCTTGCTGG 1741 TGGGGATTTT AGTGAGATTC TATGTCAGAA TTCAGTGCCC GACTTTCTTG TACAAAGTtg 1801 gcattataag aaagcattgc ttatcaattt gttgcaacga ac