Construct: ORF ccsbBroadEn_03736
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010730.1_s300c1, BRDN0000390277
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SUCNR1 (56670)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56670 | SUCNR1 | succinate receptor 1 | NM_033050.6 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1068
- ORF length:
- 1002
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GGGGATCATG GCATGGAATG CAACTTGCAA AAACTGGCTG GCAGCAGAGG 121 CTGCCCTGGA AAAGTACTAC CTTTCCATTT TTTATGGGAT TGAGTTCGTT GTGGGAGTCC 181 TTGGAAATAC CATTGTTGTT TACGGCTACA TCTTCTCTCT GAAGAACTGG AACAGCAGTA 241 ATATTTATCT CTTTAACCTC TCTGTCTCTG ACTTAGCTTT TCTGTGCACC CTCCCCATGC 301 TGATAAGGAG TTATGCCAAT GGAAACTGGA TATATGGAGA CGTGCTCTGC ATAAGCAACC 361 GATATGTGCT TCATGCCAAC CTCTATACCA GCATTCTCTT TCTCACTTTT ATCAGCATAG 421 ATCGATACTT GATAATTAAG TATCCTTTCC GAGAACACCT TCTGCAAAAG AAAGAGTTTG 481 CTATTTTAAT CTCCTTGGCC ATTTGGGTTT TAGTAACCTT AGAGTTACTA CCCATACTTC 541 CCCTTATAAA TCCTGTTATA ACTGACAATG GCACCACCTG TAATGATTTT GCAAGTTCTG 601 GAGACCCCAA CTACAACCTC ATTTACAGCA TGTGTCTAAC ACTGTTGGGG TTCCTTATTC 661 CTCTTTTTGT GATGTGTTTC TTTTATTACA AGATTGCTCT CTTCCTAAAG CAGAGGAATA 721 GGCAGGTTGC TACTGCTCTG CCCCTTGAAA AGCCTCTCAA CTTGGTCATC ATGGCAGTGG 781 TAATCTTCTC TGTGCTTTTT ACACCCTATC ACGTCATGCG GAATGTGAGG ATCGCTTCAC 841 GCCTGGGGAG TTGGAAGCAG TATCAGTGCA CTCAGGTCGT CATCAACTCC TTTTACATTG 901 TGACACGGCC TTTGGCCTTT CTGAACAGTG TCATCAACCC TGTCTTCTAT TTTCTTTTGG 961 GAGATCACTT CAGGGACATG CTGATGAATC AACTGAGACA CAACTTCAAA TCCCTTACAT 1021 CCTTTAGCAG ATGGGCTCAT GAACTCCTAC TTTCATTCAG AGAAAAGTGC CTAACTTTCT 1081 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac