Construct: ORF ccsbBroadEn_04037
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004339.1_s300c1, BRDN0000395287
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TMEM223 (79064)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79064 | TMEM223 | transmembrane protein 223 | NM_001080501.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 675
- ORF length:
- 606
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGGCGCCT TGGAGGCGAT GGCCCACGGG GCTGCTAGCC GTGCTGCGGC 121 CCCTGCTCAC CTGCCGGCCC CTGCAAGGCA CGACGCTGCA ACGGGATGTG CTGCTCTTTG 181 AGCATGATCG GGGCCGCTTC TTCACCATCC TCGGGCTGTT CTGCGCGGGC CAGGGCGTCT 241 TCTGGGCTTC CATGGCTGTG GCAGCCGTGT CCCGGCCCCC GGTTCCGGTG CAGCCTCTGG 301 ATGCGGAGGT CCCAAATCGT GGCCCCTTCG ACCTGCGCTC CGCGCTCTGG CGCTACGGTC 361 TGGCCGTCGG CTGCGGCGCC ATCGGAGCCC TCGTACTCGG TGCTGGTCTT CTCTTCTCTC 421 TCCGGTCTGT GCGCTCAGTG GTGCTTCGAG CTGGAGGGCA GCAGGTGACC CTCACCACTC 481 ATGCCCCCTT TGGCTTGGGG GCCCATTTCA CAGTTCCTTT GAAGCAGGTA TCTTGCATGG 541 CCCACCGGGG TGAAGTCCCT GCCATGCTAC CTCTGAAAGT CAAAGGCCGA CGCTTCTATT 601 TCCTCTTGGA CAAAACTGGA CACTTCCCTA ACACAAAACT CTTTGACAAT ACTGTGGGTG 661 CCTACCGGAG CTTGTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 721 tatcaatttg ttgcaacgaa c