Construct: ORF ccsbBroadEn_04056
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005116.1_s300c1, BRDN0000388741
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MMP28 (79148)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79148 | MMP28 | matrix metallopeptidase 28 | NM_001032278.3 | 100% | 100% | |
| 2 | human | 79148 | MMP28 | matrix metallopeptidase 28 | XM_017025062.1 | 33.9% | 33.5% | (many diffs) |
| 3 | human | 79148 | MMP28 | matrix metallopeptidase 28 | XM_017025063.1 | 33.9% | 33.5% | (many diffs) |
| 4 | human | 79148 | MMP28 | matrix metallopeptidase 28 | XM_017025064.1 | 33.9% | 33.5% | (many diffs) |
| 5 | human | 79148 | MMP28 | matrix metallopeptidase 28 | XM_011525231.1 | 32.9% | 32.5% | (many diffs) |
| 6 | human | 79148 | MMP28 | matrix metallopeptidase 28 | NM_032950.4 | 32.6% | 32.3% | (many diffs) |
| 7 | human | 79148 | MMP28 | matrix metallopeptidase 28 | XM_011525230.1 | 30.7% | 30.3% | (many diffs) |
| 8 | human | 79148 | MMP28 | matrix metallopeptidase 28 | XM_011525225.1 | 28.9% | 28.7% | (many diffs) |
| 9 | human | 79148 | MMP28 | matrix metallopeptidase 28 | XM_011525232.2 | 25.9% | 25.7% | (many diffs) |
| 10 | human | 79148 | MMP28 | matrix metallopeptidase 28 | NM_024302.5 | 24.6% | 24.4% | (many diffs) |
| 11 | human | 79148 | MMP28 | matrix metallopeptidase 28 | NR_111988.2 | 16.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 65
- ORF end:
- 455
- ORF length:
- 390
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGCATGGTC GCGCGCGTCG GCCTCCTGCT GCGCGCCCTG CAGCTGCTAC TGTGGGGCCA 121 CCTGGACGCC CAGCCCGCGG AGCGCGGAGG CCAGGAGCTG CGCAAGGAGG CGGAGGCATT 181 CCTAGAGAAG TACGGATACC TCAATGAACA GGTCCCCAAA GCTCCCACCT CCACTCGATT 241 CAGCGATGCC ATCAGAGCGT TTCAGTGGGT GTCCCAGCTA CCTGTCAGCG GCGTGTTGGA 301 CCGCGCCACC CTGCGCCAGA TGACTCGTCC CCGCTGCGGG GTTACAGATA CCAACAGTTA 361 TGCGGCCTGG GCTGAGAGGA TCAGTGACTT GTTTGCTAGA CACCGGACCA AAATGAGGCG 421 TAAGAAACGC TTTGCAAAGC AAGGTGAGCA CTGTTACCCA ACTTTCTTGT ACAAAGTtgg 481 cattataaga aagcattgct tatcaatttg ttgcaacgaa c