Construct: ORF ccsbBroadEn_04072
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018037.1_s300c1, BRDN0000395632
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HMGN5 (79366)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79366 | HMGN5 | high mobility group nucleos... | NM_030763.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 912
- ORF length:
- 846
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CAAAAGAAAG GCTGCAGGTC AAGGTGATAT GAGGCAGGAG CCAAAGAGAA 121 GATCTGCCAG GTTGTCTGCT ATGCTTGTGC CAGTTACACC AGAGGTGAAG CCTAAAAGAA 181 CATCAAGTTC AAGGAAAATG AAGACAAAAA GTGATATGAT GGAAGAAAAC ATAGATACAA 241 GTGCCCAAGC AGTTGCTGAA ACCAAGCAAG AAGCAGTTGT TGAAGAAGAC TACAATGAAA 301 ATGCTAAAAA TGGAGAAGCC AAAATTACAG AGGCACCAGC TTCTGAAAAA GAAATTGTGG 361 AAGTAAAAGA AGAAAATATT GAAGATGCCA CAGAAAAGGG AGGAGAAAAG AAAGAAGCAG 421 TGGCAGCAGA AGTAAAAAAT GAAGAAGAAG ATCAGAAAGA AGATGAAGAA GATCAAAACG 481 AAGAGAAAGG GGAAGCTGGA AAAGAAGACA AAGATGAAAA AGGGGAAGAA GATGGAAAAG 541 AGGATAAAAA TGGAAATGAG AAAGGAGAAG ATGCAAAAGA GAAAGAAGAT GGAAAAAAAG 601 GTGAAGACGG AAAAGGAAAT GGAGAAGATG GAAAAGAGAA AGGAGAAGAT GAAAAAGAGG 661 AAGAAGACAG AAAAGAAACA GGAGATGGAA AAGAGAATGA AGATGGAAAA GAGAAGGGAG 721 ATAAAAAAGA GGGGAAAGAT GTAAAAGTCA AAGAAGATGA AAAAGAGAGA GAAGATGGAA 781 AAGAAGATGA AGGTGGAAAT GAGGAAGAAG CTGGAAAAGA GAAAGAAGAT TTAAAAGAAG 841 AGGAAGAAGG AAAAGAGGAA GATGAGATCA AAGAAGATGA TGGAAAAAAA GAGGAGCCAC 901 AGAGTATTGT TTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 961 caatttgttg caacgaac