Construct: ORF ccsbBroadEn_04320
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006302.1_s300c1, BRDN0000456169
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RBM48 (84060)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84060 | RBM48 | RNA binding motif protein 48 | NM_032120.4 | 100% | 100% | |
| 2 | human | 84060 | RBM48 | RNA binding motif protein 48 | XM_006716149.4 | 94.9% | 89.3% | (many diffs) |
| 3 | human | 84060 | RBM48 | RNA binding motif protein 48 | NM_001363366.1 | 93.5% | 94% | (many diffs) |
| 4 | human | 84060 | RBM48 | RNA binding motif protein 48 | XM_005250636.5 | 91.9% | 89.1% | (many diffs) |
| 5 | human | 84060 | RBM48 | RNA binding motif protein 48 | NM_001363367.1 | 52.3% | 52.3% | 0_1ins525 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1170
- ORF length:
- 1101
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGTCGAGC GGCGGGGAGC TAGGGAGTTT ATTTGATCAC CACGTCCAGA 121 GGGCGGTATG CGACACACGG GCCAAATATC GAGAGGGACG ACGGCCTCGT GCTGTGAAGG 181 TATATACAAT CAATTTGGAA TCTCAGTACT TATTAATACA AGGAGTTCCT GCTGTGGGAG 241 TCATGAAGGA ATTAGTTGAG CGATTCGCTT TATATGGTGC AATTGAACAG TACAATGCTC 301 TAGATGAATA CCCAGCAGAA GACTTTACTG AAGTTTATCT TATTAAATTT ATGAACTTAC 361 AAAGTGCAAG GACAGCCAAG AGAAAAATGG ATGAACAGAG TTTCTTCGGT GGATTGCTTC 421 ATGTGTGCTA TGCTCCAGAA TTTGAAACAG TTGAAGAAAC TAGAAAAAAA CTACAAATGC 481 GGAAGGCATA TGTAGTAAAA ACTACTGAAA ATAAAGACCA TTACGTGACA AAGAAGAAAT 541 TGGTTACAGA GCATAAAGAC ACAGAGGATT TTAGACAAGA CTTCCACTCA GAGATGTCTG 601 GATTTTGTAA AGCTGCTTTG AACACTTCTG CAGGGAACTC AAATCCTTAT CTTCCGTATT 661 CCTGTGAATT GCCTTTATGT TATTTCTCCT CAAAATGTAT GTGTTCATCC GGGGGACCTG 721 TAGACAGAGC ACCAGACTCC TCTAAGGATG GTAGAAACCA TCATAAAACA ATGGGGCATT 781 ATAACCACAA TGACTCTTTG CGGAAAACAC AGATAAACTC TTTGAAAAAC TCAGTGGCCT 841 GCCCTGGTGC ACAAAAGGCT ATTACGTCTT CAGAGGCAGT TGACAGATTT ATGCCTAGGA 901 CAACACAACT GCAGGAGCGC AAAAGAAGAA GAGAAGATGA TCGTAAACTT GGAACTTTTC 961 TTCAAACAAA CCCAACTGGT AATGAGATTA TGATTGGACC TCTGTTACCA GACATCTCTA 1021 AAGTGGATAT GCACGATGAC TCATTGAATA CAACGGCGAA TTTAATTCGG CATAAACTTA 1081 AAGAGGTAAT TTCATCTGTG CCAAAGCCTC CAGAGGACAA GCCAGAAGAT GTACATACAA 1141 GTCATCCATT AAAACAAAGA AGAAGAATAT TGCCAACTTT CTTGTACAAA GTTGGcatta 1201 taagaaagca ttgcttatca atttgttgca acgaac