Construct: ORF ccsbBroadEn_04463
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010256.1_s300c1, BRDN0000455203
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PIGY (84992)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84992 | PIGY | phosphatidylinositol glycan... | NM_001042616.2 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 282
- ORF length:
- 213
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTTTCTGTCT CTTCCTACGT TGACTGTTCT TATTCCACTG GTTTCTTTAG 121 CAGGACTGTT CTACTCAGCC TCTGTGGAAG AAAACTTCCC ACAGGGCTGC ACTAGCACAG 181 CCAGCCTTTG CTTTTACAGC CTGCTCTTGC CTATTACCAT ACCAGTGTAT GTATTCTTCC 241 ACCTTTGGAC TTGGATGGGT ATTAAACTCT TCAGGCATAA TTTGCCAACT TTCTTGTACA 301 AAGTTGGcat tataagaaag cattgcttat caatttgttg caacgaac