Construct: ORF ccsbBroadEn_04506

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010404.1_s300c1, BRDN0000456125
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EFCAB11 (90141)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 90141 EFCAB11 EF-hand calcium binding dom... NM_145231.4 100% 100%
2 human 90141 EFCAB11 EF-hand calcium binding dom... NM_001284266.2 86.3% 84% (many diffs)
3 human 90141 EFCAB11 EF-hand calcium binding dom... NM_001284269.2 85% 84.6% 1_1delAins70;3_4insGAA
4 human 90141 EFCAB11 EF-hand calcium binding dom... NM_001284268.2 71.4% 68.7% (many diffs)
5 human 90141 EFCAB11 EF-hand calcium binding dom... NM_001284267.1 70.5% 70.5% 0_1ins144
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
555
ORF length:
489
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT CTTCTCCGAG GCCAGAGCCA GGTCGCGGAC GTGGGAAGCC AGTCCCTCGG
121AACACAGGAA GTGGGTGGAA GTATTTAAAG CATGTGATGA AGATCACAAA GGATATCTCA
181GCAGAGAGGA CTTTAAAACT GCTGTTGTAA TGCTGTTTGG GTACAAGCCC TCCAAGATAG
241AAGTGGATTC TGTGATGTCT TCAATAAATC CAAATACTTC TGGTATATTA CTCGAGGGGT
301TTTTAAATAT TGTCAGGAAA AAGAAGGAAG CTCAACGATA TCGGAACGAA GTAAGACACA
361TCTTCACAGC CTTTGACACC TACTATCGTG GATTTTTAAC TTTGGAAGAT TTCAAAAAAG
421CATTTAGGCA GGTGGCTCCC AAATTACCGG AAAGGACTGT TCTTGAGGTA TTCAGGGAAG
481TAGATCGAGA TTCAGATGGT CACGTCAGCT TTAGAGACTT TGAATATGCC CTGAACTATG
541GACAGAAGGA AGCCTACCCA ACTTTCTTGT ACAAAGTTGG cattataaga aagcattgct
601tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)