Construct: ORF ccsbBroadEn_04903
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001208.1_s300c1, BRDN0000395177
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF786 (136051)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 136051 | ZNF786 | zinc finger protein 786 | NM_152411.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2415
- ORF length:
- 2346
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGGAGCCG CCTCGGCTAC CTCTGACTTT TGAGGATGTT GCTATTTATT 121 TCTCCGAGCA AGAATGGCAG GATCTAGAGG CATGGCAGAA GGAACTTTAC AAGCATGTGA 181 TGAGAAGCAA TTATGAGACT CTCGTCTCTC TAGATGATGG ACTTCCAAAA CCAGAACTAA 241 TATCCTGGAT TGAACACGGG GGAGAGCCCT TCAGGAAATG GAGAGAATCA CAGAAATCAG 301 GAAACATAAT TTGCTCCTCT GTTGATATGC ATTTTGATCC AGGTTTTGAG GAACAGCTGT 361 TTTGGGGAAG CCAGCAGGCT ATGAATTCAG GAAAAACTAA AAGCCATTTC CAATTAGATC 421 CTGAAAGCCA GTGTTCCTTT GGATCCTTTG TTTCCTTCAG GCCTGACCAA GGCATCACCC 481 TCGGGAGCCC ACAGAGACAC GACGCCAGGG CTCCTCCACC ACTAGCCTGC GGCCCCAGTG 541 AATCTACCCT AAAAGAAGGA ATCCCAGGTC CCAGAAATCT GGATCTTCCT GGTTTGTGGG 601 ACGTCCCCGC CTGGGAGAGC ACCCAGCACC CTTGGCCTGT CTGCGGGGAA AGCTGTTGGG 661 AGAACAACCA TTTAGTAATG CACCAGAGAG GCCACTCAAA GGACCGGACA CGTAGGGCCT 721 GGGAGAAATT CAACAAGAGG GCGGAGACGC AGATGCCGTG GAGCAGCCCT CGGGTACAGA 781 GGCACTTCCG GTGTGGCGTG TGCGGTAAGA GCTTCCGCCG GAAGCTGTGT CTGCTGCGCC 841 ATCTGGCGGC CCACACGGGG AGGGGCCCCT TCCGGAACGC TGACGGTGAA ATGTGCTTCC 901 GACACGAGCT GACCCATCCC AGCCACCGCC TCCCGCAGCA GGGGGAGAAG CCTGCCCAGT 961 GCACCCCATG CGGCAAGCGC TCCCTCCCAG TGGACAGCAC GCAGGCTCGC CGGTGCCAGC 1021 ACAGCCGGGA GGGGCCGGCC TCTTGGAGAG AAGGCCGCGG GGCCTCCAGC AGTGTGCACT 1081 CGGGACAGAA ACCAGGCTCG CGCCTGCCCC AGGAGGGGAA CAGCCACCAG GAAGGGGACA 1141 CGGAGGCGCT GCAGCATGGC GCAGAGGGGC CCTGCTCCTG CTCGGAGTGT GGCGAGCGCT 1201 CCCCTATGAG CGCCAGGCTC GCCAGCCCCT GCAGGGCGCA TACTGGAGAA AAGCCCTTCC 1261 AGTGTGCGCA TTGCACCAAG CGCTTCCGCC TGCGCCGCCT GCTGCAGGTC CACCAGCACG 1321 CGCACGGTGG GGAGAGACCG TTCTCCTGCA GGAAGTGTGG CAAGGGCTTC GCCAAGCAGT 1381 GTAAACTCAC GGAGCACATT CGAGTCCACA GCGGAGAGAA GCCTTTCCGG TGTGCCAAGT 1441 GTGGCAGGAA CTTCCGTCAG AGGGGACAGC TGCTGCGGCA CCAGCGGCTG CACACGGACG 1501 AGAAGCCCTT TCAGTGCCCA GAGTGTGGGC TGAGCTTCCG CCTGGAGAGC ATGCTGAGAG 1561 CCCACCGGCT CCGGCACGGT GGGGAGAGGC CGTTCTCCTG TAGCGAGTGT GGCAGAGGCT 1621 TCACCCACCA GTGCAAGCTC CGTGAGCACC TGAGAGTGCA CAGCGGGGAG AGGCCCTTCC 1681 AGTGCCTGAA GTGCGACAAG CGCTTCCGCC TGAAGGGCAT CCTGAAGGCC CACCAGCACA 1741 CGCACAGCAA GGAGAGGCCG TTCTCGTGCG GGGAGTGTGG CAAGGGCTTC ACCAGACAAT 1801 CCAAGCTCAC GGAGCACTTG CGCGTGCACA GCGGGGAGAG ACCCTTCCAG TGCCCAGAGT 1861 GCAACAGGAG CTTCCGCCTG AAGGGGCAGC TGCTCAGCCA TCAGCGCCTG CACACGGGAG 1921 AGAGGCCCTT CCAGTGTCCG GAGTGCGACA AGCGCTATCG CGTGAAGGCC GACATGAAGG 1981 CCCACCAGCT GCTGCACAGC GGGGAGATGC CTTTCTCCTG TGAGTGCGGC AAGGGCTTTG 2041 TGAAACACTC AAAGCTCATC GAGCACATCA GAACGCACAC GGGAGAGAAG CCTTTTCAGT 2101 GTCCCAAGTG TGACAAGAGT TTCCGCCTGA AGGCGCAGCT GCTCAGCCAT CAGGGCCTGC 2161 ACACAGGGGA GAGGCCTTTT CACTGCCCTG AGTGTGACAA GAACTTCCGG GAAAGGGGAC 2221 ACATGCTGAG GCACCAGCGC ATCCACAGGC CCGAGAGGCC CTTTGCCTGT GGCGATTGTG 2281 GGAAGGGCTT CATTTACAAG TCTAAGCTTG CGGAGCACAT CAGAGTACAC ACAAAATCCT 2341 GTCCTGCTCC AAATGAACTG GACATTAAGA AAAGGCTCAG CCAACTGTTT GCAATGATAG 2401 AGGCCGATTG GAGTTTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 2461 tatcaatttg ttgcaacgaa c