Construct: ORF ccsbBroadEn_04959
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014397.1_s300c1, BRDN0000397599
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DCANP1 (140947)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 140947 | DCANP1 | dendritic cell associated n... | NM_130848.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 798
- ORF length:
- 732
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA TTACGGAGCA GCAACCCACA TACAGAACTC GAGAAGCCAC GGCCTGGAGA 121 CTGTACCTGG ACACCAAAGA CTGGAGAGAG GAGCTGGTGG GGAAACCCCA GAGTTCCCAG 181 GGTGCCACTC CCCAGCTCCA CCAGAGAACT TTGGGAATGA GCTGCTGCCC CTGAGTGCCC 241 CTCTCCAGGG CCTCAGTGAG GGTCTCTACC CTCCAGGGAG GAACAAAACC TTGCCAGCTG 301 GGGTCCTGCG AGAGGGGGCA GTTCAATTCC TCCACAGGGG ACTCTGCAAC TCCAATCTTT 361 CGAGTGAAGC ATCTGCGAGG CCCTCAGGGA CCCAGGATGA ACTGCATAGC AGCAGAAGGA 421 AGACAGGCCA GACCAGGCGG GAGGGAGCCC GGAAACATCT GGTTTGTAGT TTCAGACTCT 481 ACCCGTTCAC AGTTCACACA GTCTCACCGG GAAACTCACA CCTTGCCCTG TACCAAGTTT 541 TTAAGGCAGT TAAGCTCTGC CCATCCGAGA CTTCATTTTT CTTGAGTAGA AAATCACTGA 601 AATCATCAGA TCCATGGCAC CCACCTTCAC TTTCTCCTAA CAGCTGGAAC CGTCAGGCTG 661 GCTTCAGGGC CTGGTCTTCG CACTTGATAT CACTATCCCT CACCTGCTCA GACAGCCAGA 721 GCAGGCGGGT GAGTTCCTCC CAACAACCTC CACTGCATTC TCTCAGCTCC CACCGCAGGG 781 CAGCCCACGT GCCTGAGTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 841 gcttatcaat ttgttgcaac gaac