Construct: ORF ccsbBroadEn_05155
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015874.1_s300c1, BRDN0000397205
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GIMAP1 (170575)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 170575 | GIMAP1 | GTPase, IMAP family member 1 | NM_130759.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 984
- ORF length:
- 918
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG AGGAAGGAAG ATGGCGACAG ATGAAGAAAA TGTCTATGGT TTAGAAGAGA 121 ACGCTCAGTC CCGGCAGGAG TCCACGCGGA GGCTCATCCT TGTTGGGAGA ACAGGGGCCG 181 GGAAGAGCGC CACTGGGAAC AGCATCCTGG GCCAGAGACG GTTCTTCTCC AGGCTGGGGG 241 CCACGTCTGT GACCAGGGCC TGCACCACGG GCAGCCGCAG GTGGGACAAG TGCCACGTGG 301 AAGTCGTGGA CACTCCGGAC ATTTTCAGCT CCCAAGTGTC CAAGACAGAT CCTGGCTGTG 361 AGGAGAGAGG TCACTGCTAC CTGCTCTCGG CCCCCGGACC CCACGCGCTG CTCCTGGTGA 421 CCCAGTTGGG TCGGTTCACC GCCCAGGACC AGCAGGCGGT GAGGCAGGTG AGGGACATGT 481 TCGGGGAGGA CGTCCTAAAA TGGATGGTCA TCGTCTTCAC CAGGAAGGAG GACCTGGCCG 541 GGGGCTCCCT GCACGATTAC GTGAGCAACA CAGAGAACCG GGCCTTGCGC GAGCTGGTGG 601 CCGAGTGCGG GGGCCGGGTC TGTGCCTTTG ATAACCGGGC CACCGGCCGG GAGCAGGAAG 661 CCCAGGTGGA GCAGCTGCTG GGGATGGTCG AGGGCTTGGT GCTGGAGCAC AAGGGCGCCC 721 ATTACTCCAA CGAGGTGTAT GAGCTGGCGC AGGTGCTGCG CTGGGCAGGC CCTGAGGAGC 781 GGCTCCGGCG GGTGGCGGAG CGCGTGGCAG CCAGGGTGCA GAGGAGGCCA TGGGGCGCCT 841 GGCTGTCGGC CCGGCTGTGG AAGTGGCTGA AGTCCCCCAG GAGCTGGAGG CTGGGCCTGG 901 CCCTGCTGCT GGGGGGCGCG CTCCTGTTCT GGGTGCTGCT CCACAGGCGG TGGTCGGAGG 961 CCGTTGCGGA GGTCGGGCCT GACTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1021 agcattgctt atcaatttgt tgcaacgaac