Construct: ORF ccsbBroadEn_05212
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011566.1_s300c1, BRDN0000385980
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SUSD3 (203328)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 203328 | SUSD3 | sushi domain containing 3 | NM_145006.4 | 100% | 100% | |
| 2 | human | 203328 | SUSD3 | sushi domain containing 3 | XM_017014451.2 | 89.9% | 89% | (many diffs) |
| 3 | human | 203328 | SUSD3 | sushi domain containing 3 | XM_017014448.1 | 89.7% | 85% | (many diffs) |
| 4 | human | 203328 | SUSD3 | sushi domain containing 3 | XM_017014449.1 | 89.7% | 85% | (many diffs) |
| 5 | human | 203328 | SUSD3 | sushi domain containing 3 | NM_001287005.2 | 89.6% | 86.6% | (many diffs) |
| 6 | human | 203328 | SUSD3 | sushi domain containing 3 | XM_011518358.1 | 89.6% | 86.6% | (many diffs) |
| 7 | human | 203328 | SUSD3 | sushi domain containing 3 | XM_011518359.1 | 89.6% | 86.6% | (many diffs) |
| 8 | human | 203328 | SUSD3 | sushi domain containing 3 | XM_011518361.2 | 89.6% | 86.6% | (many diffs) |
| 9 | human | 203328 | SUSD3 | sushi domain containing 3 | XM_017014450.1 | 89.6% | 86.6% | (many diffs) |
| 10 | human | 203328 | SUSD3 | sushi domain containing 3 | NM_001287006.1 | 82.7% | 82.7% | 425_426ins132 |
| 11 | human | 203328 | SUSD3 | sushi domain containing 3 | XM_011518362.1 | 77.6% | 77.6% | 0_1ins171 |
| 12 | human | 203328 | SUSD3 | sushi domain containing 3 | NM_001287008.2 | 75.2% | 74.9% | 88_89ins189 |
| 13 | human | 203328 | SUSD3 | sushi domain containing 3 | NM_001287007.2 | 58% | 57.6% | 88_89ins189;236_237ins132 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 831
- ORF length:
- 765
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCG CTGGGCGGCC GCCACCCTCC GTGGCAAGGC GAGGCCCCGG GGGCGGGCCG 121 GGGTCACCAC GCCTGCCCCA GGGAACCGCA CAGGCACGTG CGCTAAGCTG CGGCTACCCC 181 CGCAAGCAAC CTTCCAAGTC CTTCGTGGCA ATGGTGCTTC CGTGGGGACC GTGCTCATGT 241 TCCGCTGCCC CTCCAACCAC CAGATGGTGG GGTCTGGGCT CCTCACCTGC ACCTGGAAGG 301 GGAGCATCGC TGAGTGGTCT TCAGGGTCCC CAGTGTGCAA ACTGGTGCCA CCACACGAGA 361 CCTTTGGCTT CAAGGTGGCC GTGATCGCCT CCATTGTGAG CTGTGCCATC ATCCTGCTCA 421 TGTCCATGGC CTTCCTCACC TGCTGCCTCC TCAAGTGCGT GAAGAAGAGC AAGCGGCGGC 481 GCTCCAACAG GTCAGCCCAG CTGTGGTCCC AGCTGAAAGA TGAGGACTTG GAGACGGTGC 541 AGGCCGCATA CCTTGGCCTC AAGCACTTCA ACAAACCCGT GAGCGGGCCC AGCCAGGCGC 601 ACGACAACCA CAGCTTCACC ACAGACCATG GTGAGAGCAC CAGCAAGCTG GCCAGTGTGA 661 CCCGCAGCGT GGACAAGGAC CCTGGGATCC CCAGAGCTCT AAGCCTCAGT GGCTCCTCCA 721 GCTCACCCCA AGCCCAGGTG ATGGTGCACA TGGCAAACCC CAGACAGCCC CTGCCTGCCT 781 CTGGGCTGGC CACAGGAATG CCACAACAGC CCGCAGCATA TGCCCTAGGG TGCCCAACTT 841 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac