Construct: ORF ccsbBroadEn_05218
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004877.1_s300c1, BRDN0000398557
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PLAC9 (219348)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 219348 | PLAC9 | placenta associated 9 | NM_001012973.3 | 100% | 100% | |
| 2 | human | 219348 | PLAC9 | placenta associated 9 | NM_001331125.2 | 76.3% | 53.5% | (many diffs) |
| 3 | human | 389033 | PLAC9P1 | placenta associated 9 pseud... | NR_026740.1 | 35.6% | (many diffs) | |
| 4 | human | 219348 | PLAC9 | placenta associated 9 | NR_138551.2 | 31.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 360
- ORF length:
- 291
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCGGCCCCTG CTCTGCGCGC TGACCGGACT GGCCCTGCTC CGCGCCGCGG 121 GCTCTTTGGC CGCTGCCGAA CCCTTCAGCC CTCCGCGAGG AGACTCAGCT CAGAGCACAG 181 CGTGTGACAG ACACATGGCT GTGCAACGCC GTCTAGATGT CATGGAGGAG ATGGTAGAGA 241 AGACCGTGGA TCACCTGGGG ACAGAGGTGA AAGGCCTGCT GGGCCTGCTG GAGGAGCTGG 301 CCTGGAACCT GCCCCCGGGA CCCTTCAGCC CCGCTCCCGA CCTTCTCGGA GATGGCTTCT 361 TGCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 421 acgaac