Construct: ORF ccsbBroadEn_05261
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003811.1_s300c1, BRDN0000456424
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZBTB12 (221527)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 221527 | ZBTB12 | zinc finger and BTB domain ... | NM_181842.3 | 100% | 100% | |
| 2 | human | 221527 | ZBTB12 | zinc finger and BTB domain ... | XM_011514383.2 | 100% | 100% | |
| 3 | mouse | 193736 | Zbtb12 | zinc finger and BTB domain ... | NM_198886.3 | 89.4% | 97.3% | (many diffs) |
| 4 | mouse | 193736 | Zbtb12 | zinc finger and BTB domain ... | XM_006523890.3 | 89.4% | 97.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1443
- ORF length:
- 1377
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CTCTGGGGTG GAAGTCCTGC GCTTCCAGCT GCCCGGCCAC GAGGCCGCAA 121 CGCTACGGAA CATGAACCAG CTCCGGGCAG AGGAGCGGTT CTGCGACGTG ACCATTGTGG 181 CCGACAGCCT CAAGTTTCGA GGCCACAAGG TCATCTTGGC CGCCTGCTCA CCCTTCCTGC 241 GGGACCAGTT CCTGCTGAAC CCCAGCTCGG AGCTGCAGGT CTCCCTGATG CACAGTGCAC 301 GCATCGTGGC CGACTTGCTC CTCTCCTGCT ACACGGGCGC CTTGGAATTC GCTGTTAGGG 361 ACATCGTCAA CTACCTTACA GCCGCCTCCT ACCTGCAGAT GGAGCACGTG GTGGAGAAAT 421 GCCGGAATGC CCTCAGCCAG TTCATTGAGC CCAAAATAGG CCTCAAAGAG GATGGGGTCA 481 GTGAGGCTAG CCTTGTGAGC AGCATCAGCG CCACCAAGTC CCTCCTCCCT CCAGCCAGGA 541 CCCCAAAGCC AGCCCCGAAG CCCCCACCCC CACCTCCTCT ACCCCCTCCA CTCCTGCGGC 601 CAGTGAAGCT GGAGTTCCCA CTGGATGAAG ACTTGGAGCT GAAAGCCGAG GAAGAGGATG 661 AGGATGAGGA TGAGGACGTG TCTGACATCT GCATCGTCAA GGTGGAGTCG GCCCTGGAGG 721 TGGCACACCG GCTCAAACCC CCTGGAGGCC TGGGAGGGGG TCTGGGCATT GGAGGCTCCG 781 TGGGTGGCCA CCTTGGGGAG CTGGCCCAGA GCAGCGTTCC CCCCAGCACT GTAGCCCCAC 841 CGCAGGGTGT GGTGAAGGCC TGCTATAGCC TGTCGGAAGA TGCAGAAGGG GAGGGCCTGC 901 TGTTGATTCC CGGAGGCCGG GCCAGCGTGG GGGCCACCTC GGGCCTGGTG GAAGCAGCAG 961 CGGTGGCCAT GGCTGCCCGG GGGGCGGGGG GCAGCCTGGG GGCGGGGGGC AGCCGGGGAC 1021 CCCTGCCTGG GGGCTTCTCA GGTGGAAACC CCTTAAAGAA CATCAAGTGC ACCAAGTGCC 1081 CGGAAGTGTT CCAGGGCGTG GAGAAGCTGG TCTTCCACAT GCGGGCGCAG CACTTCATCT 1141 TCATGTGCCC TCGCTGTGGC AAGCAGTTCA ACCACAGCAG CAACCTCAAC CGCCACATGA 1201 ACGTGCATCG TGGTGTCAAG TCACACTCGT GCGGCATCTG CGGCAAGTGC TTCACACAGA 1261 AGTCCACCCT TCACGACCAC CTCAACCTGC ACTCGGGAGC GCGGCCCTAC CGCTGCTCCT 1321 ACTGCGACGT GCGCTTCGCC CACAAGCCTG CCATTAGGCG GCACCTCAAG GAGCAACACG 1381 GCAAGACCAC GGCCGAGAAC GTGCTGGAGG CCAGTGTGGC CGAGATTAAC GTCCTCATCC 1441 GCTACCCAAC TTTCTTGTAC AAAGTTGGca ttataagaaa gcattgctta tcaatttgtt 1501 gcaacgaac