Construct: ORF ccsbBroadEn_05465
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008075.1_s300c1, BRDN0000397190
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STING1 (340061)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 340061 | STING1 | stimulator of interferon re... | NM_198282.4 | 100% | 100% | |
| 2 | human | 340061 | STING1 | stimulator of interferon re... | NM_001301738.2 | 74.6% | 64.6% | 757_758ins187;849_850ins101 |
| 3 | human | 340061 | STING1 | stimulator of interferon re... | XM_011537639.3 | 70.6% | 66.8% | (many diffs) |
| 4 | human | 340061 | STING1 | stimulator of interferon re... | NM_001367258.1 | 68.6% | 68.6% | 0_1ins357 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1203
- ORF length:
- 1137
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CCACTCCAGC CTGCATCCAT CCATCCCGTG TCCCAGGGGT CACGGGGCCC 121 AGAAGGCAGC CTTGGTTCTG CTGAGTGCCT GCCTGGTGAC CCTTTGGGGG CTAGGAGAGC 181 CACCAGAGCA CACTCTCCGG TACCTGGTGC TCCACCTAGC CTCCCTGCAG CTGGGACTGC 241 TGTTAAACGG GGTCTGCAGC CTGGCTGAGG AGCTGCGCCA CATCCACTCC AGGTACCGGG 301 GCAGCTACTG GAGGACTGTG CGGGCCTGCC TGGGCTGCCC CCTCCGCCGT GGGGCCCTGT 361 TGCTGCTGTC CATCTATTTC TACTACTCCC TCCCAAATGC GGTCGGCCCG CCCTTCACTT 421 GGATGCTTGC CCTCCTGGGC CTCTCGCAGG CACTGAACAT CCTCCTGGGC CTCAAGGGCC 481 TGGCCCCAGC TGAGATCTCT GCAGTGTGTG AAAAAGGGAA TTTCAACGTG GCCCATGGGC 541 TGGCATGGTC ATATTACATC GGATATCTGC GGCTGATCCT GCCAGAGCTC CAGGCCCGGA 601 TTCGAACTTA CAATCAGCAT TACAACAACC TGCTACGGGG TGCAGTGAGC CAGCGGCTGT 661 ATATTCTCCT CCCATTGGAC TGTGGGGTGC CTGATAACCT GAGTATGGCT GACCCCAACA 721 TTCGCTTCCT GGATAAACTG CCCCAGCAGA CCGGTGACCA TGCTGGCATC AAGGATCGGG 781 TTTACAGCAA CAGCATCTAT GAGCTTCTGG AGAACGGGCA GCGGGCGGGC ACCTGTGTCC 841 TGGAGTACGC CACCCCCTTG CAGACTTTGT TTGCCATGTC ACAATACAGT CAAGCTGGCT 901 TTAGCCGGGA GGATAGGCTT GAGCAGGCCA AACTCTTCTG CCGGACACTT GAGGACATCC 961 TGGCAGATGC CCCTGAGTCT CAGAACAACT GCCGCCTCAT TGCCTACCAG GAACCTGCAG 1021 ATGACAGCAG CTTCTCGCTG TCCCAGGAGG TTCTCCGGCA CCTGCGGCAG GAGGAAAAGG 1081 AAGAGGTTAC TGTGGGCAGC TTGAAGACCT CAGCGGTGCC CAGTACCTCC ACGATGTCCC 1141 AAGAGCCTGA GCTCCTCATC AGTGGAATGG AAAAGCCCCT CCCTCTCCGC ACGGATTTCT 1201 CTTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1261 gcaacgaac