Construct: ORF ccsbBroadEn_05535

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004227.1_s300c1, BRDN0000456092
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMEM179B (374395)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 374395 TMEM179B transmembrane protein 179B NM_199337.3 100% 100%
2 human 374395 TMEM179B transmembrane protein 179B NM_001363600.1 93.6% 93.6% 375_376ins42
3 human 374395 TMEM179B transmembrane protein 179B NM_001363601.1 74.4% 73% (many diffs)
4 human 374395 TMEM179B transmembrane protein 179B NM_001363599.1 65.7% 63.4% 419_420ins79;432_433ins146
5 mouse 67706 Tmem179b transmembrane protein 179B NM_026325.3 85.4% 80.8% (many diffs)
6 mouse 67706 Tmem179b transmembrane protein 179B NR_028419.1 60.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
723
ORF length:
657
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GCTGTCCTGG CTGCAGCGCG TCGAGCTTGC GCTCTTTGCT GCCGCCTTCC
121TGTGCGGGGC CGTGGCGGCC GCGGCGATGA CTCGGACCCA GGGCTCCTTC AGTGGTAGAT
181GTCCCCTGTA TGGTGTGGCC ACCCTGAATG GCTCCTCCCT GGCCTTATCC CGTCCCTCAG
241CACCATCCCT GTGCTACTTT GTAGCTGGGG CCTCTGGCCT CTTGGCCCTC TACTGCCTCC
301TGCTTTTGCT CTTCTGGATC TACAGCAGCT GCATCGAGGA CTCCCACAGA GGTGCTATAG
361GGCTGCGCAT TGCACTGGCC ATCTCAGCTA TAGCCGTCTT CCTGGTCTTG GTGTCTGCCT
421GTATCCTTCG ATTTGGCACC AGGTCTCTCT GCAACTCCAT CATCTCCTTG AACACTACAA
481TTAGCTGTTC TGAAGCCCAG AAAATTCCAT GGACACCCCC TGGAACTGCT CTGCAGTTTT
541ACTCCAACCT ACACAATGCT GAAACCTCTT CTTGGGTGAA TTTGGTATTG TGGTGTGTGG
601TCTTGGTGCT CCAGGTCGTG CAGTGGAAGT CTGAAGCCAC CCCATACCGG CCTCTGGAGA
661GGGGTGACCC TGAGTGGAGC TCTGAGACAG ATGCTCTCGT TGGGTCACGC CTTTCCCATT
721CCTGCCCAAC TTTCTTGTAC AAAGTTGGca ttataagaaa gcattgctta tcaatttgtt
781gcaacgaac

Download FASTA (ORF) (Full)

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