Construct: ORF ccsbBroadEn_05551
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006403.1_s300c1, BRDN0000455749
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC10 (376132)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 376132 | LRRC10 | leucine rich repeat contain... | NM_201550.4 | 100% | 100% | |
| 2 | mouse | 237560 | Lrrc10 | leucine rich repeat contain... | NM_146242.2 | 85.4% | 87.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 900
- ORF length:
- 831
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGGAACACC ATCAGGGCCC TCGTGGCCTT CATCCCTGCT GACCGTTGCC 121 AGAACTATGT GGTCAGGGAC CTCCGTGAGA TGCCGCTGGA CAAGATGGTG GATCTGAGTG 181 GGAGCCAGTT ACGCCGCTTC CCCCTGCACG TGTGCTCCTT CAGGGAGCTG GTCAAGCTCT 241 ACCTGAGCGA CAACCACCTC AATAGCCTGC CTCCGGAGCT GGGGCAGCTA CAGAACCTGC 301 AGATTCTGGC CTTGGATTTC AACAACTTCA AGGCTCTGCC CCAGGTGGTG TGCACCTTGA 361 AACAGCTCTG CATCCTCTAC CTGGGCAACA ACAAACTCTG CGACCTCCCC AGTGAGCTGA 421 GCCTGCTCCA GAACCTCAGG ACCCTGTGGA TCGAGGCCAA CTGCCTCACC CAGCTGCCGG 481 ATGTGGTCTG TGAGCTGAGT CTCCTTAAGA CTCTGCATGC CGGCTCCAAC GCCCTGCGTT 541 TGCTGCCAGG CCAGCTCCGG CGCCTCCAGG AGCTGAGGAC CATCTGGCTC TCGGGCAACC 601 GGCTAACTGA CTTTCCCACT GTGCTGCTTC ACATGCCCTT CCTGGAGGTG ATTGATGTGG 661 ACTGGAACAG CATCCGTTAC TTCCCCAGCC TGGCGCACCT GTCAAGTCTG AAGCTGGTCA 721 TCTATGACCA CAATCCTTGC AGGAACGCAC CCAAGGTGGC CAAAGGTGTG CGCCGTGTGG 781 GGAGATGGGC AGAGGAGACG CCAGAGCCCG ACCCTAGAAA AGCCAGGCGC TATGCGTTGG 841 TCAGAGAGGA AAGCCAGGAG CTACAGGCAC CAGTCCCTCT ACTTCCTCCT ACCAACTCCT 901 TGCCAACTTT CTTGTACAAA GTTGGcatta taagaaagca ttgcttatca atttgttgca 961 acgaac