Construct: ORF ccsbBroadEn_05562
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002880.1_s300c1, BRDN0000398537
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SUMO4 (387082)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 387082 | SUMO4 | small ubiquitin like modifi... | NM_001002255.2 | 100% | 100% | |
| 2 | human | 6613 | SUMO2 | small ubiquitin like modifi... | NM_006937.4 | 92.9% | 85.2% | (many diffs) |
| 3 | human | 6613 | SUMO2 | small ubiquitin like modifi... | NM_001005849.2 | 70.5% | 67.3% | (many diffs) |
| 4 | mouse | 170930 | Sumo2 | small ubiquitin-like modifi... | NM_133354.2 | 90.1% | 85.2% | (many diffs) |
| 5 | mouse | 102636299 | LOC102636299 | small ubiquitin-related mod... | XR_880878.2 | 18.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 354
- ORF length:
- 285
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCCAACGAA AAGCCCACAG AAGAAGTCAA GACTGAGAAC AACAATCATA 121 TTAATTTGAA GGTGGCGGGA CAGGATGGTT CTGTGGTGCA GTTTAAGATT AAGAGGCAGA 181 CACCACTTAG TAAACTAATG AAAGCCTATT GTGAACCACG GGGATTGTCA GTGAAGCAGA 241 TCAGATTCCG ATTTGGTGGG CAACCAATCA GTGGAACAGA CAAACCTGCA CAGTTGGAAA 301 TGGAAGATGA AGATACAATT GATGTGTTTC AACAGCCTAC GGGAGGTGTC TACTTGCCAA 361 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac