Construct: ORF ccsbBroadEn_05635
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000539.1_s300c1, BRDN0000397229
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOC400590 (400590)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 107984974 | LOC107984974 | uncharacterized LOC107984974 | XR_002957955.1 | 12.8% | 1_1122del;1429_2388del | |
| 2 | human | 107984974 | LOC107984974 | uncharacterized LOC107984974 | XR_002957958.1 | 9.5% | 1_999del;1124_1125ins181 | |
| 3 | human | 107984974 | LOC107984974 | uncharacterized LOC107984974 | XR_002957956.1 | 4.4% | 1_2532del;2657_2658ins181 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 372
- ORF length:
- 306
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG CATTTTGTTT ATGAGCAAGG TGGGTCTCAG AGGTGATCGG CGATCAGAGG 121 GCGATGAAGT TCTAGATCCA TTGAGACAAG CTCTAGACAG TAGCATGCAG TCCCACAACT 181 TGTACCAGCA TCCCCAGCAT CTGGCATTCC ATGTTTCTGC TCCTGTGGCC TCCACAGTGC 241 AACAAGCTAG CGGTTTACTT GGACCTCTAC CTCATCTTTC TTCTTTTGCG CTTCAGCCTG 301 CGCATTCGCT TCTTCCTCCA CTTGGCTCTC ATGGTGCAGG TTTCCAAGAA AATGGCGCTA 361 AGGCCGAGAG TTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 421 caatttgttg caacgaac