Construct: ORF ccsbBroadEn_05801
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007090.1_s300c1, BRDN0000386387
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ALDH3A1 (218)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | NM_000691.5 | 99.8% | 99.7% | 400T>G;741T>A |
| 2 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | NM_001135167.1 | 99.8% | 99.7% | 400T>G;741T>A |
| 3 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | NM_001135168.1 | 99.8% | 99.7% | 400T>G;741T>A |
| 4 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | NM_001330150.2 | 83.7% | 83.6% | 0_1ins219;181T>G;522T>A |
| 5 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | XM_011523731.2 | 83.7% | 83.6% | 0_1ins219;181T>G;522T>A |
| 6 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | XM_005256522.1 | 72.3% | 55.8% | (many diffs) |
| 7 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | XM_005256523.3 | 72.3% | 55.8% | (many diffs) |
| 8 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | XM_005256524.3 | 72.3% | 55.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1425
- ORF length:
- 1359
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG CAAGATCAGC GAGGCCGTGA AGCGCGCCCG CGCCGCCTTC AGCTCGGGCA 121 GGACCCGTCC GCTGCAGTTC CGGATCCAGC AGCTGGAGGC GCTGCAGCGC CTGATCCAGG 181 AGCAGGAGCA GGAGCTGGTG GGCGCGCTGG CCGCAGACCT GCACAAGAAT GAATGGAACG 241 CCTACTATGA GGAGGTGGTG TACGTCCTAG AGGAGATCGA GTACATGATC CAGAAGCTCC 301 CTGAGTGGGC CGCGGATGAG CCCGTGGAGA AGACGCCCCA GACTCAGCAG GACGAGCTCT 361 ACATCCACTC GGAGCCACTG GGCGTGGTCC TCGTCATTGG CACCTGGAAC TACCCCTTCA 421 ACCTCACCAT CCAGCCCATG GTGGGCGCCA TCGCTGCAGG GAACGCAGTG GTCCTCAAGC 481 CCTCGGAGCT GAGTGAGAAC ATGGCGAGCC TGCTGGCTAC CATCATCCCC CAGTACCTGG 541 ACAAGGATCT GTACCCAGTA ATCAATGGGG GTGTCCCTGA GACCACGGAG CTGCTCAAGG 601 AGAGGTTCGA CCATATCCTG TACACGGGCA GCACGGGGGT GGGGAAGATC ATCATGACGG 661 CTGCTGCCAA GCACCTGACC CCTGTCACGC TGGAGCTGGG AGGGAAGAGT CCCTGCTACG 721 TGGACAAGAA CTGTGACCTG GACGTGGCCT GCCGACGCAT CGCCTGGGGG AAATTCATGA 781 ACAGTGGCCA GACCTGCGTG GCCCCAGACT ACATCCTCTG TGACCCCTCG ATCCAGAACC 841 AAATTGTGGA GAAGCTCAAG AAGTCACTGA AAGAGTTCTA CGGGGAAGAT GCTAAGAAAT 901 CCCGGGACTA TGGAAGAATC ATTAGTGCCC GGCACTTCCA GAGGGTGATG GGCCTGATTG 961 AGGGCCAGAA GGTGGCTTAT GGGGGCACCG GGGATGCCGC CACTCGCTAC ATAGCCCCCA 1021 CCATCCTCAC GGACGTGGAC CCCCAGTCCC CGGTGATGCA AGAGGAGATC TTCGGGCCTG 1081 TGCTGCCCAT CGTGTGCGTG CGCAGCCTGG AGGAGGCCAT CCAGTTCATC AACCAGCGTG 1141 AGAAGCCCCT GGCCCTCTAC ATGTTCTCCA GCAACGACAA GGTGATTAAG AAGATGATTG 1201 CAGAGACATC CAGTGGTGGG GTGGCGGCCA ACGATGTCAT CGTCCACATC ACCTTGCACT 1261 CTCTGCCCTT CGGGGGCGTG GGGAACAGCG GCATGGGATC CTACCATGGC AAGAAGAGCT 1321 TCGAGACTTT CTCTCACCGC CGCTCTTGCC TGGTGAGGCC TCTGATGAAT GATGAAGGCC 1381 TGAAGGTCAG ATACCCCCCG AGCCCGGCCA AGATGACCCA GCACTGCCCA ACTTTCTTGT 1441 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c